miRNA display CGI


Results 61 - 80 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21382 5' -59.3 NC_004812.1 + 29811 0.66 0.729835
Target:  5'- cGGCGCCCCgccuccggGgACCCUgggGGCCGGa--- -3'
miRNA:   3'- -UCGUGGGGa-------UgUGGGA---CCGGUCguug -5'
21382 5' -59.3 NC_004812.1 + 60125 0.66 0.729835
Target:  5'- cGCGCCagcggcguguCCUGC-CCCUccaggaggGGCCAGgCGGCg -3'
miRNA:   3'- uCGUGG----------GGAUGuGGGA--------CCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 37661 0.66 0.729835
Target:  5'- cGCAgUCCcACACCagcggGGgCAGCAGCg -3'
miRNA:   3'- uCGUgGGGaUGUGGga---CCgGUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 155793 0.66 0.729835
Target:  5'- cGgACCCCcaggAC-CCCcGGCCGGgCGGCg -3'
miRNA:   3'- uCgUGGGGa---UGuGGGaCCGGUC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 64494 0.66 0.728858
Target:  5'- cGCAUCCCccagagcACGCCCgaggaGGCCgugcuccucgacaAGCAGCa -3'
miRNA:   3'- uCGUGGGGa------UGUGGGa----CCGG-------------UCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 16095 0.66 0.7269
Target:  5'- cGGCACCaucgagcgCCUGCGCgagacgaacacggaCCUGGCgAcGCAGCu -3'
miRNA:   3'- -UCGUGG--------GGAUGUG--------------GGACCGgU-CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 154666 0.66 0.723958
Target:  5'- uGCACCCgUccccccgacgggcggACGCCCcGGCCGG-AGCc -3'
miRNA:   3'- uCGUGGGgA---------------UGUGGGaCCGGUCgUUG- -5'
21382 5' -59.3 NC_004812.1 + 74257 0.66 0.720024
Target:  5'- aGGUACgCCU-CGCCCcGGCCGcGCAc- -3'
miRNA:   3'- -UCGUGgGGAuGUGGGaCCGGU-CGUug -5'
21382 5' -59.3 NC_004812.1 + 70983 0.66 0.720024
Target:  5'- gAGCACCgCgGgGCCCgcgGGUCGGCcGCc -3'
miRNA:   3'- -UCGUGGgGaUgUGGGa--CCGGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 112250 0.66 0.720024
Target:  5'- uGCGCCCCgggcACGCCCUuuGCCcGCGc- -3'
miRNA:   3'- uCGUGGGGa---UGUGGGAc-CGGuCGUug -5'
21382 5' -59.3 NC_004812.1 + 126073 0.66 0.720024
Target:  5'- cGCGCgCCCUGCGCCUgccccCCGGCGc- -3'
miRNA:   3'- uCGUG-GGGAUGUGGGacc--GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 80767 0.66 0.720024
Target:  5'- --aACCCCUACACCCccgagaaCCAGCAc- -3'
miRNA:   3'- ucgUGGGGAUGUGGGacc----GGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 84806 0.66 0.720024
Target:  5'- cGCcaACCCCcACGCCaCgacGGCuCGGCGACc -3'
miRNA:   3'- uCG--UGGGGaUGUGG-Ga--CCG-GUCGUUG- -5'
21382 5' -59.3 NC_004812.1 + 14421 0.66 0.720024
Target:  5'- cGGCcaGCCCC-GCGCC--GGCCAGCGc- -3'
miRNA:   3'- -UCG--UGGGGaUGUGGgaCCGGUCGUug -5'
21382 5' -59.3 NC_004812.1 + 142143 0.66 0.720024
Target:  5'- gGGCcccGCCCCcGCGCCCUccGGCCA-CAc- -3'
miRNA:   3'- -UCG---UGGGGaUGUGGGA--CCGGUcGUug -5'
21382 5' -59.3 NC_004812.1 + 123919 0.66 0.720024
Target:  5'- uGGCGCCCgCggu-CCCgGGCCGGCccGGCc -3'
miRNA:   3'- -UCGUGGG-GauguGGGaCCGGUCG--UUG- -5'
21382 5' -59.3 NC_004812.1 + 30258 0.66 0.720024
Target:  5'- aAGUGCCaCC-ACGCCCccgGGCCcagggcGCAGCa -3'
miRNA:   3'- -UCGUGG-GGaUGUGGGa--CCGGu-----CGUUG- -5'
21382 5' -59.3 NC_004812.1 + 84899 0.66 0.720024
Target:  5'- gAGCGacuUCCCg--GCCCUGGCCcGaCAGCa -3'
miRNA:   3'- -UCGU---GGGGaugUGGGACCGGuC-GUUG- -5'
21382 5' -59.3 NC_004812.1 + 140023 0.66 0.720024
Target:  5'- uGCGgCCCUGcCGCCCgcgGGcCCGGUcGCc -3'
miRNA:   3'- uCGUgGGGAU-GUGGGa--CC-GGUCGuUG- -5'
21382 5' -59.3 NC_004812.1 + 55588 0.66 0.720024
Target:  5'- cAGCGCCCC-AgGCUC--GCCAGCGAg -3'
miRNA:   3'- -UCGUGGGGaUgUGGGacCGGUCGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.