miRNA display CGI


Results 61 - 80 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 142416 0.66 0.857338
Target:  5'- cCUGGCGcggcgacgcaguuGUCCGCgcGUCG--GCCGcGCGCg -3'
miRNA:   3'- -GACUGC-------------CAGGCG--UAGCugUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 117179 0.66 0.855833
Target:  5'- -gGGCGGUcgCCGCggCGACcgggauaaaaggcaGCCGGCu- -3'
miRNA:   3'- gaCUGCCA--GGCGuaGCUG--------------UGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 148080 0.66 0.855833
Target:  5'- -gGGCGGUcgCCGCggCGACcgggauaaaaggcaGCCGGCu- -3'
miRNA:   3'- gaCUGCCA--GGCGuaGCUG--------------UGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 44221 0.66 0.853561
Target:  5'- -gGACGGgcgaacgcguguggCCGCcgCGAguCCGGCa- -3'
miRNA:   3'- gaCUGCCa-------------GGCGuaGCUguGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 74633 0.66 0.850505
Target:  5'- -cGACGGcccCCGCccgcUCGGCGCUcuuggccccgauGGCGCc -3'
miRNA:   3'- gaCUGCCa--GGCGu---AGCUGUGG------------CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 56199 0.66 0.850505
Target:  5'- -gGGCGGcCucgcggCGCAUCGACcuccgGCCGGUGg -3'
miRNA:   3'- gaCUGCCaG------GCGUAGCUG-----UGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 58191 0.66 0.850505
Target:  5'- --cGCGGccgCCGCAcCGagacGCugCGGCGCc -3'
miRNA:   3'- gacUGCCa--GGCGUaGC----UGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 23446 0.66 0.850505
Target:  5'- cCUGGCGG-CCGCGUU--UGCC-GCGCu -3'
miRNA:   3'- -GACUGCCaGGCGUAGcuGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 67468 0.66 0.850505
Target:  5'- -cGGCGuGUCCccacGCGUCcGCggGCUGGCGCc -3'
miRNA:   3'- gaCUGC-CAGG----CGUAGcUG--UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 30962 0.66 0.850505
Target:  5'- -cGAgGGUCagguaCGCcgCGACGuuGGCGg -3'
miRNA:   3'- gaCUgCCAG-----GCGuaGCUGUggCCGCg -5'
21383 3' -58.1 NC_004812.1 + 98914 0.66 0.850505
Target:  5'- -gGGgGGUuuGCggCGcACgcgGCCGGCGCc -3'
miRNA:   3'- gaCUgCCAggCGuaGC-UG---UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 124247 0.66 0.850505
Target:  5'- cCUGGCGGggggCGCG-CG-CGgCGGCGCc -3'
miRNA:   3'- -GACUGCCag--GCGUaGCuGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 13136 0.66 0.850505
Target:  5'- -gGGCGGUggugCCGCcggCGACAgCGacGCGCg -3'
miRNA:   3'- gaCUGCCA----GGCGua-GCUGUgGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 137258 0.66 0.850505
Target:  5'- --cGCGGUCgGgGccgagggguucUCGGCcCCGGCGCu -3'
miRNA:   3'- gacUGCCAGgCgU-----------AGCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 154234 0.66 0.850505
Target:  5'- cCUGGCgcuGGaCCGC---GACGCCGcGCGCg -3'
miRNA:   3'- -GACUG---CCaGGCGuagCUGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 59265 0.66 0.850505
Target:  5'- -cGGCGGUgCGCGggaUCaggguCGCgGGCGCg -3'
miRNA:   3'- gaCUGCCAgGCGU---AGcu---GUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 126542 0.66 0.850505
Target:  5'- cCUGugGGagUCCGCcgcCGuCGCCgaGGCGUg -3'
miRNA:   3'- -GACugCC--AGGCGua-GCuGUGG--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 105816 0.66 0.850505
Target:  5'- gUGGgGGcUCCGgc-CGGCGgCGGCGCg -3'
miRNA:   3'- gACUgCC-AGGCguaGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 102829 0.66 0.850505
Target:  5'- -gGGCGG-CgCGCcUCcACGCCGGCGa -3'
miRNA:   3'- gaCUGCCaG-GCGuAGcUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 28726 0.66 0.850505
Target:  5'- cCUGGCgcuGGaCCGC---GACGCCGcGCGCg -3'
miRNA:   3'- -GACUG---CCaGGCGuagCUGUGGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.