miRNA display CGI


Results 41 - 60 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 146275 0.66 0.865479
Target:  5'- -aGACGG-CCGC--CGAUuuuCUGGUGCg -3'
miRNA:   3'- gaCUGCCaGGCGuaGCUGu--GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 130814 0.66 0.865479
Target:  5'- -cGGCGaGcUCCGCgagcgcGUCGucCGCCGGgGCg -3'
miRNA:   3'- gaCUGC-C-AGGCG------UAGCu-GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 136490 0.66 0.864749
Target:  5'- ---cCGGUCCGCucccccgCGcgccgcuGCGCgCGGCGCg -3'
miRNA:   3'- gacuGCCAGGCGua-----GC-------UGUG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 10550 0.66 0.864749
Target:  5'- -cGACuGGUCCacguagcGCcgCGACcCUGGCGUc -3'
miRNA:   3'- gaCUG-CCAGG-------CGuaGCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 101167 0.66 0.863282
Target:  5'- cCUGACGG-CCGCGgcggggacggUCGuggacaaccgcgccGCGCCGGgGg -3'
miRNA:   3'- -GACUGCCaGGCGU----------AGC--------------UGUGGCCgCg -5'
21383 3' -58.1 NC_004812.1 + 69995 0.66 0.863282
Target:  5'- -gGuCGGUCUGCGuugcgaUCGACACCauggccccgccgcgGGCGg -3'
miRNA:   3'- gaCuGCCAGGCGU------AGCUGUGG--------------CCGCg -5'
21383 3' -58.1 NC_004812.1 + 106416 0.66 0.861068
Target:  5'- --aGCGGggggCCGCGgcgcucgaagaucgCGGCGCUGGCGg -3'
miRNA:   3'- gacUGCCa---GGCGUa-------------GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 84412 0.66 0.858088
Target:  5'- -gGACGccCCGCGaCGAC-CCGGgGCc -3'
miRNA:   3'- gaCUGCcaGGCGUaGCUGuGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 89266 0.66 0.858088
Target:  5'- -cGugGGaCgCGCAggccgCGGCG-CGGCGCg -3'
miRNA:   3'- gaCugCCaG-GCGUa----GCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 25199 0.66 0.858088
Target:  5'- -cGGCGGcUCCGCc----CGCCGGCGg -3'
miRNA:   3'- gaCUGCC-AGGCGuagcuGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 48166 0.66 0.858088
Target:  5'- -gGGCGG-CgGCcgCGGCGCUGGagaaCGCg -3'
miRNA:   3'- gaCUGCCaGgCGuaGCUGUGGCC----GCG- -5'
21383 3' -58.1 NC_004812.1 + 62954 0.66 0.858088
Target:  5'- -cGGgGGUCCGCAUcaaCGACGuacaCGGgGUa -3'
miRNA:   3'- gaCUgCCAGGCGUA---GCUGUg---GCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 143082 0.66 0.858088
Target:  5'- -cGACGGgCCGUG-CGAC-CCGGcCGUc -3'
miRNA:   3'- gaCUGCCaGGCGUaGCUGuGGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 14363 0.66 0.858088
Target:  5'- uUGcCGG-CCGCGcgGGCGCggCGGCGCa -3'
miRNA:   3'- gACuGCCaGGCGUagCUGUG--GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 147738 0.66 0.858088
Target:  5'- aUGACgcggGGUCCGCGg-GACGCgGG-GCu -3'
miRNA:   3'- gACUG----CCAGGCGUagCUGUGgCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 126931 0.66 0.858088
Target:  5'- cCUGGCGGUUUcUcgCGGCGUCGGCGg -3'
miRNA:   3'- -GACUGCCAGGcGuaGCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 73334 0.66 0.858088
Target:  5'- ---cUGGaUCCGCGUgCGGCGagCGGCGCc -3'
miRNA:   3'- gacuGCC-AGGCGUA-GCUGUg-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 58052 0.66 0.858088
Target:  5'- -gGGCGGggagCGCGUgGACucccUCGGCGCc -3'
miRNA:   3'- gaCUGCCag--GCGUAgCUGu---GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 150707 0.66 0.858088
Target:  5'- -cGGCGGcUCCGCc----CGCCGGCGg -3'
miRNA:   3'- gaCUGCC-AGGCGuagcuGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 142416 0.66 0.857338
Target:  5'- cCUGGCGcggcgacgcaguuGUCCGCgcGUCG--GCCGcGCGCg -3'
miRNA:   3'- -GACUGC-------------CAGGCG--UAGCugUGGC-CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.