miRNA display CGI


Results 21 - 40 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 139093 0.66 0.865479
Target:  5'- uUGcACGGggagCCGaaagacgCGGCugggGCCGGCGCg -3'
miRNA:   3'- gAC-UGCCa---GGCgua----GCUG----UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 145991 0.66 0.865479
Target:  5'- gCUGuGCGGggUCGCGUauuacaUGACGUCGGCGCu -3'
miRNA:   3'- -GAC-UGCCa-GGCGUA------GCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 141761 0.66 0.865479
Target:  5'- -gGGCGG-CCGCGgggCGGCGucgaaCGGcCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUa--GCUGUg----GCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 2551 0.66 0.865479
Target:  5'- -cGGCGGUacucgcgcggCgGCAggGGCACgGGCGUg -3'
miRNA:   3'- gaCUGCCA----------GgCGUagCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27308 0.66 0.865479
Target:  5'- -cGA-GG-CCGcCGUCGcCGCCGuGCGCg -3'
miRNA:   3'- gaCUgCCaGGC-GUAGCuGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 29581 0.66 0.865479
Target:  5'- -cGGCGG-CgGCAugcccUCGcGCGgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGU-----AGC-UGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 124040 0.66 0.865479
Target:  5'- -gGGCGGgCCGCGgcgccgCGGCcaacgggggAgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUa-----GCUG---------UgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 154941 0.66 0.865479
Target:  5'- -gGGCGGgCCGCGgcgccgCGGCcaacgggggAgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUa-----GCUG---------UgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 5306 0.66 0.865479
Target:  5'- -cGGCGaGcUCCGCgagcgcGUCGucCGCCGGgGCg -3'
miRNA:   3'- gaCUGC-C-AGGCG------UAGCu-GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 130814 0.66 0.865479
Target:  5'- -cGGCGaGcUCCGCgagcgcGUCGucCGCCGGgGCg -3'
miRNA:   3'- gaCUGC-C-AGGCG------UAGCu-GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 152816 0.66 0.865479
Target:  5'- -cGA-GG-CCGcCGUCGcCGCCGuGCGCg -3'
miRNA:   3'- gaCUgCCaGGC-GUAGCuGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 76522 0.66 0.865479
Target:  5'- -cGACGG-CUGCcugGUCGAgGgCGGgGCg -3'
miRNA:   3'- gaCUGCCaGGCG---UAGCUgUgGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 146275 0.66 0.865479
Target:  5'- -aGACGG-CCGC--CGAUuuuCUGGUGCg -3'
miRNA:   3'- gaCUGCCaGGCGuaGCUGu--GGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 128059 0.66 0.865479
Target:  5'- -cGGCGGUacucgcgcggCgGCAggGGCACgGGCGUg -3'
miRNA:   3'- gaCUGCCA----------GgCGUagCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 104876 0.66 0.865479
Target:  5'- -cGGCGGUCgucguCGcCGUCGccguCGCCguGGCGCa -3'
miRNA:   3'- gaCUGCCAG-----GC-GUAGCu---GUGG--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 134690 0.66 0.865479
Target:  5'- -gGGCGGagCCGC--CGAgcCGCCGGCuGCg -3'
miRNA:   3'- gaCUGCCa-GGCGuaGCU--GUGGCCG-CG- -5'
21383 3' -58.1 NC_004812.1 + 116364 0.66 0.865479
Target:  5'- -cGACGGaCUGUuUCGGCucgucgccgccgGCCaGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGuAGCUG------------UGG-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 155089 0.66 0.865479
Target:  5'- -cGGCGG-CgGCAugcccUCGcGCGgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGU-----AGC-UGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 55986 0.66 0.865479
Target:  5'- -aGGCGGUCgccgaaCGCGcgcucgaagugcUCGGC-CCGGCGg -3'
miRNA:   3'- gaCUGCCAG------GCGU------------AGCUGuGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 151696 0.66 0.865479
Target:  5'- ---cCGGgCCGCAgCGAgCGgCGGCGCg -3'
miRNA:   3'- gacuGCCaGGCGUaGCU-GUgGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.