miRNA display CGI


Results 21 - 40 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 37115 0.76 0.320126
Target:  5'- -aGGCGGUguuggcgcCCGCGUCGGcCGCCgcGGCGCa -3'
miRNA:   3'- gaCUGCCA--------GGCGUAGCU-GUGG--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 123389 0.76 0.320126
Target:  5'- aUGAUGGUCUGCA-CGGCGUCGGgGCg -3'
miRNA:   3'- gACUGCCAGGCGUaGCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 51738 0.76 0.33454
Target:  5'- -cGACGGcgacgacgaCCGCcgCGGcCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa--------GGCGuaGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 22987 0.76 0.33454
Target:  5'- gCUGGCGGUggCCGCcuacgucgucGUCGGCGCgacaaCGGCGCg -3'
miRNA:   3'- -GACUGCCA--GGCG----------UAGCUGUG-----GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 66214 0.76 0.338955
Target:  5'- cCUGGCGGUCCGCcaggacagccagCGAgGCCaggaaGGCGCg -3'
miRNA:   3'- -GACUGCCAGGCGua----------GCUgUGG-----CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2655 0.76 0.341922
Target:  5'- uCUGcACGGagCGCAUCGACGa-GGCGCa -3'
miRNA:   3'- -GAC-UGCCagGCGUAGCUGUggCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 33556 0.76 0.341922
Target:  5'- uCUGcACGGagCGCAUCGACGa-GGCGCa -3'
miRNA:   3'- -GAC-UGCCagGCGUAGCUGUggCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 58817 0.75 0.360117
Target:  5'- --cGCGGUUCuuggccgccuccgagGCGUUGGCGCCGGCGCc -3'
miRNA:   3'- gacUGCCAGG---------------CGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 105389 0.75 0.364771
Target:  5'- -cGAUGGUCuCGC--UGGCGCCGGUGCc -3'
miRNA:   3'- gaCUGCCAG-GCGuaGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27470 0.75 0.364771
Target:  5'- -gGGCGGcgCCGCG-CGccCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUaGCu-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 152978 0.75 0.364771
Target:  5'- -gGGCGGcgCCGCG-CGccCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUaGCu-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 90816 0.75 0.372617
Target:  5'- cCUGGCGGcgUCGUGgagcacgUGGCGCCGGCGCc -3'
miRNA:   3'- -GACUGCCa-GGCGUa------GCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 108482 0.75 0.372617
Target:  5'- gCUGACGGU-CGCGgucaaCGGCGCCaGCGCc -3'
miRNA:   3'- -GACUGCCAgGCGUa----GCUGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 145386 0.75 0.372617
Target:  5'- gUGugGGcCUGCGUC-ACcuGCCGGCGCg -3'
miRNA:   3'- gACugCCaGGCGUAGcUG--UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 146314 0.75 0.372617
Target:  5'- -aGACGGcgcUCagGCGUCGGCGCCGGCa- -3'
miRNA:   3'- gaCUGCC---AGg-CGUAGCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 108389 0.75 0.372617
Target:  5'- cCUGggccGCGGggcUCCGC-UCG-CGCCGGCGCa -3'
miRNA:   3'- -GAC----UGCC---AGGCGuAGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 68870 0.75 0.372617
Target:  5'- -cGuCGGUCCGCGgcccCGGCGCCcGCGCc -3'
miRNA:   3'- gaCuGCCAGGCGUa---GCUGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151381 0.75 0.380578
Target:  5'- -cGACGG-CCGCGaggcCGACGCCGGCu- -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 25873 0.75 0.380578
Target:  5'- -cGACGG-CCGCGaggcCGACGCCGGCu- -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 37474 0.75 0.380578
Target:  5'- -gGGCGGUacggccggucguUCGCcgCGuCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCA------------GGCGuaGCuGUGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.