miRNA display CGI


Results 1 - 20 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 137069 1.1 0.001879
Target:  5'- gCUGACGGUCCGCAUCGACACCGGCGCc -3'
miRNA:   3'- -GACUGCCAGGCGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 55621 0.87 0.073414
Target:  5'- -aGGCGGUCCGCGUacaGcCGCCGGCGCu -3'
miRNA:   3'- gaCUGCCAGGCGUAg--CuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 45056 0.85 0.095078
Target:  5'- cCUGG-GGUCCGCGUCGGCcggGCCGGCGUc -3'
miRNA:   3'- -GACUgCCAGGCGUAGCUG---UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 55364 0.83 0.12584
Target:  5'- cCUGACGGcgCUGCggcccGUCGAgGCCGGCGCg -3'
miRNA:   3'- -GACUGCCa-GGCG-----UAGCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 127763 0.82 0.135712
Target:  5'- -cGGCGGggUCCGCGUCGGCGuCCGcGCGCa -3'
miRNA:   3'- gaCUGCC--AGGCGUAGCUGU-GGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 2255 0.82 0.135712
Target:  5'- -cGGCGGggUCCGCGUCGGCGuCCGcGCGCa -3'
miRNA:   3'- gaCUGCC--AGGCGUAGCUGU-GGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 48196 0.81 0.173953
Target:  5'- -cGAgGGUCCGCGccaCGuGCGCCGGCGCg -3'
miRNA:   3'- gaCUgCCAGGCGUa--GC-UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 114573 0.81 0.173953
Target:  5'- gCUGACGGUCgUGCGcUUGGCGCCGcGCGCc -3'
miRNA:   3'- -GACUGCCAG-GCGU-AGCUGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 86746 0.8 0.196479
Target:  5'- -cGGgGGUCCGCGUCGGCcaUGGCGCa -3'
miRNA:   3'- gaCUgCCAGGCGUAGCUGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 31601 0.8 0.201279
Target:  5'- ----gGGUCCggagcuccgucgGCGUCGGCGCCGGCGCg -3'
miRNA:   3'- gacugCCAGG------------CGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 700 0.8 0.201279
Target:  5'- ----gGGUCCggagcuccgucgGCGUCGGCGCCGGCGCg -3'
miRNA:   3'- gacugCCAGG------------CGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 121017 0.78 0.249207
Target:  5'- -cGGCGGgCCGgGggcgcuccccUCGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCgU----------AGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151918 0.78 0.249207
Target:  5'- -cGGCGGgCCGgGggcgcuccccUCGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCgU----------AGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 46625 0.78 0.267162
Target:  5'- --uACGcGUCCGgGUCGACGCgGGCGCc -3'
miRNA:   3'- gacUGC-CAGGCgUAGCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 67063 0.78 0.267162
Target:  5'- gCUGAgccuccgGGUCCGCcgccaggcgGUCGAcCACCGGCGCg -3'
miRNA:   3'- -GACUg------CCAGGCG---------UAGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 69858 0.77 0.286149
Target:  5'- gCUGACGa-CCGgGUCGGC-CCGGCGCu -3'
miRNA:   3'- -GACUGCcaGGCgUAGCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 140591 0.77 0.286149
Target:  5'- gCUGACccuGG-CCGcCAUgGGCGCCGGCGCc -3'
miRNA:   3'- -GACUG---CCaGGC-GUAgCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 105575 0.77 0.299388
Target:  5'- gCUGcCGGUCCGCGgcgaUGGCACCGaccaGCGCg -3'
miRNA:   3'- -GACuGCCAGGCGUa---GCUGUGGC----CGCG- -5'
21383 3' -58.1 NC_004812.1 + 136672 0.77 0.305498
Target:  5'- --uACGGUCCGgcggaaaUAUCGGcCGCCGGCGCg -3'
miRNA:   3'- gacUGCCAGGC-------GUAGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 94658 0.76 0.313096
Target:  5'- uCUGGCGGcggCCGUugguuuuuAUCGACGCgGGUGCg -3'
miRNA:   3'- -GACUGCCa--GGCG--------UAGCUGUGgCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.