miRNA display CGI


Results 1 - 20 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 45 0.72 0.512459
Target:  5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 443 0.68 0.765534
Target:  5'- --cGCGcGcCCGCcgCGAgcccgggcCGCCGGCGCg -3'
miRNA:   3'- gacUGC-CaGGCGuaGCU--------GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 549 0.7 0.629741
Target:  5'- -aGGCGGcgacgcgCCGCG-CGACGCCcgcccgucccgcGGCGCg -3'
miRNA:   3'- gaCUGCCa------GGCGUaGCUGUGG------------CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 571 0.69 0.689152
Target:  5'- --cGCGG-CCGCGUgGAgcCGCgGGCGCg -3'
miRNA:   3'- gacUGCCaGGCGUAgCU--GUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 700 0.8 0.201279
Target:  5'- ----gGGUCCggagcuccgucgGCGUCGGCGCCGGCGCg -3'
miRNA:   3'- gacugCCAGG------------CGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 1108 0.73 0.484407
Target:  5'- -cGGCGGcCCGgGUCGcuuCGCCGGgGCc -3'
miRNA:   3'- gaCUGCCaGGCgUAGCu--GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 1312 0.73 0.484407
Target:  5'- -gGGCGGUCCGCGggCGGucCGCgGGCGg -3'
miRNA:   3'- gaCUGCCAGGCGUa-GCU--GUGgCCGCg -5'
21383 3' -58.1 NC_004812.1 + 1345 0.7 0.639682
Target:  5'- -gGGCGGUCCGCcggaaggcCGGCuaugcaaacGCCGuGCGCg -3'
miRNA:   3'- gaCUGCCAGGCGua------GCUG---------UGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 1385 0.66 0.872672
Target:  5'- -cGACGGcCCGCccCG-CGCC-GCGCc -3'
miRNA:   3'- gaCUGCCaGGCGuaGCuGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 1423 0.69 0.698943
Target:  5'- -cGGCGG-CCGCGgggaGGgGCCGGgGCc -3'
miRNA:   3'- gaCUGCCaGGCGUag--CUgUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 1454 0.69 0.698943
Target:  5'- -gGGcCGGgcaCgGCggCGACGCCGGCGUc -3'
miRNA:   3'- gaCU-GCCa--GgCGuaGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2008 0.74 0.43938
Target:  5'- -cGGCGGUCgcucgggGCGcCGACGCCGGCGg -3'
miRNA:   3'- gaCUGCCAGg------CGUaGCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 2222 0.69 0.689152
Target:  5'- --cGCGGcCCGCGgcccagCGcACGCgCGGCGCg -3'
miRNA:   3'- gacUGCCaGGCGUa-----GC-UGUG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2255 0.82 0.135712
Target:  5'- -cGGCGGggUCCGCGUCGGCGuCCGcGCGCa -3'
miRNA:   3'- gaCUGCC--AGGCGUAGCUGU-GGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 2349 0.69 0.698943
Target:  5'- -gGGCGG-CaggGCGUCgGGC-CCGGCGCg -3'
miRNA:   3'- gaCUGCCaGg--CGUAG-CUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2402 0.68 0.746941
Target:  5'- -aGACGGgCCGCAgCGGCGCgGccagcccccaGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUaGCUGUGgC----------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 2551 0.66 0.865479
Target:  5'- -cGGCGGUacucgcgcggCgGCAggGGCACgGGCGUg -3'
miRNA:   3'- gaCUGCCA----------GgCGUagCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2623 0.67 0.809916
Target:  5'- uUGGCG--CCGCGgcccaggcgCGGCGgCGGCGCg -3'
miRNA:   3'- gACUGCcaGGCGUa--------GCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2655 0.76 0.341922
Target:  5'- uCUGcACGGagCGCAUCGACGa-GGCGCa -3'
miRNA:   3'- -GAC-UGCCagGCGUAGCUGUggCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 3263 0.69 0.716429
Target:  5'- -gGGCGGgCCGCAgcgcgcggcgagCGAgGCCaGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUa-----------GCUgUGGcCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.