miRNA display CGI


Results 1 - 20 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 151381 0.75 0.380578
Target:  5'- -cGACGG-CCGCGaggcCGACGCCGGCu- -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 152978 0.75 0.364771
Target:  5'- -gGGCGGcgCCGCG-CGccCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUaGCu-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 146314 0.75 0.372617
Target:  5'- -aGACGGcgcUCagGCGUCGGCGCCGGCa- -3'
miRNA:   3'- gaCUGCC---AGg-CGUAGCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 68870 0.75 0.372617
Target:  5'- -cGuCGGUCCGCGgcccCGGCGCCcGCGCc -3'
miRNA:   3'- gaCuGCCAGGCGUa---GCUGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 90816 0.75 0.372617
Target:  5'- cCUGGCGGcgUCGUGgagcacgUGGCGCCGGCGCc -3'
miRNA:   3'- -GACUGCCa-GGCGUa------GCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 108482 0.75 0.372617
Target:  5'- gCUGACGGU-CGCGgucaaCGGCGCCaGCGCc -3'
miRNA:   3'- -GACUGCCAgGCGUa----GCUGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 145386 0.75 0.372617
Target:  5'- gUGugGGcCUGCGUC-ACcuGCCGGCGCg -3'
miRNA:   3'- gACugCCaGGCGUAGcUG--UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 108389 0.75 0.372617
Target:  5'- cCUGggccGCGGggcUCCGC-UCG-CGCCGGCGCa -3'
miRNA:   3'- -GAC----UGCC---AGGCGuAGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 37474 0.75 0.380578
Target:  5'- -gGGCGGUacggccggucguUCGCcgCGuCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCA------------GGCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 58817 0.75 0.360117
Target:  5'- --cGCGGUUCuuggccgccuccgagGCGUUGGCGCCGGCGCc -3'
miRNA:   3'- gacUGCCAGG---------------CGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2655 0.76 0.341922
Target:  5'- uCUGcACGGagCGCAUCGACGa-GGCGCa -3'
miRNA:   3'- -GAC-UGCCagGCGUAGCUGUggCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 66214 0.76 0.338955
Target:  5'- cCUGGCGGUCCGCcaggacagccagCGAgGCCaggaaGGCGCg -3'
miRNA:   3'- -GACUGCCAGGCGua----------GCUgUGG-----CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 45056 0.85 0.095078
Target:  5'- cCUGG-GGUCCGCGUCGGCcggGCCGGCGUc -3'
miRNA:   3'- -GACUgCCAGGCGUAGCUG---UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 127763 0.82 0.135712
Target:  5'- -cGGCGGggUCCGCGUCGGCGuCCGcGCGCa -3'
miRNA:   3'- gaCUGCC--AGGCGUAGCUGU-GGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 700 0.8 0.201279
Target:  5'- ----gGGUCCggagcuccgucgGCGUCGGCGCCGGCGCg -3'
miRNA:   3'- gacugCCAGG------------CGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 121017 0.78 0.249207
Target:  5'- -cGGCGGgCCGgGggcgcuccccUCGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCgU----------AGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 67063 0.78 0.267162
Target:  5'- gCUGAgccuccgGGUCCGCcgccaggcgGUCGAcCACCGGCGCg -3'
miRNA:   3'- -GACUg------CCAGGCG---------UAGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 140591 0.77 0.286149
Target:  5'- gCUGACccuGG-CCGcCAUgGGCGCCGGCGCc -3'
miRNA:   3'- -GACUG---CCaGGC-GUAgCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 37115 0.76 0.320126
Target:  5'- -aGGCGGUguuggcgcCCGCGUCGGcCGCCgcGGCGCa -3'
miRNA:   3'- gaCUGCCA--------GGCGUAGCU-GUGG--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 22987 0.76 0.33454
Target:  5'- gCUGGCGGUggCCGCcuacgucgucGUCGGCGCgacaaCGGCGCg -3'
miRNA:   3'- -GACUGCCA--GGCG----------UAGCUGUG-----GCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.