miRNA display CGI


Results 1 - 20 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 137069 1.1 0.001879
Target:  5'- gCUGACGGUCCGCAUCGACACCGGCGCc -3'
miRNA:   3'- -GACUGCCAGGCGUAGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 105389 0.75 0.364771
Target:  5'- -cGAUGGUCuCGC--UGGCGCCGGUGCc -3'
miRNA:   3'- gaCUGCCAG-GCGuaGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 5910 0.75 0.38784
Target:  5'- -cGGCGGgcggagCCGCcgCGACGCCGccccggaGCGCg -3'
miRNA:   3'- gaCUGCCa-----GGCGuaGCUGUGGC-------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 156179 0.66 0.872672
Target:  5'- -cGGCGGgCgCGCG-CGagaGCGCCGcGCGCg -3'
miRNA:   3'- gaCUGCCaG-GCGUaGC---UGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 48196 0.81 0.173953
Target:  5'- -cGAgGGUCCGCGccaCGuGCGCCGGCGCg -3'
miRNA:   3'- gaCUgCCAGGCGUa--GC-UGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 86746 0.8 0.196479
Target:  5'- -cGGgGGUCCGCGUCGGCcaUGGCGCa -3'
miRNA:   3'- gaCUgCCAGGCGUAGCUGugGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 151918 0.78 0.249207
Target:  5'- -cGGCGGgCCGgGggcgcuccccUCGGCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCgU----------AGCUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 46625 0.78 0.267162
Target:  5'- --uACGcGUCCGgGUCGACGCgGGCGCc -3'
miRNA:   3'- gacUGC-CAGGCgUAGCUGUGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136672 0.77 0.305498
Target:  5'- --uACGGUCCGgcggaaaUAUCGGcCGCCGGCGCg -3'
miRNA:   3'- gacUGCCAGGC-------GUAGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 27470 0.75 0.364771
Target:  5'- -gGGCGGcgCCGCG-CGccCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUaGCu-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 123389 0.76 0.320126
Target:  5'- aUGAUGGUCUGCA-CGGCGUCGGgGCg -3'
miRNA:   3'- gACUGCCAGGCGUaGCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 105575 0.77 0.299388
Target:  5'- gCUGcCGGUCCGCGgcgaUGGCACCGaccaGCGCg -3'
miRNA:   3'- -GACuGCCAGGCGUa---GCUGUGGC----CGCG- -5'
21383 3' -58.1 NC_004812.1 + 55364 0.83 0.12584
Target:  5'- cCUGACGGcgCUGCggcccGUCGAgGCCGGCGCg -3'
miRNA:   3'- -GACUGCCa-GGCG-----UAGCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 51738 0.76 0.33454
Target:  5'- -cGACGGcgacgacgaCCGCcgCGGcCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCa--------GGCGuaGCU-GUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 2255 0.82 0.135712
Target:  5'- -cGGCGGggUCCGCGUCGGCGuCCGcGCGCa -3'
miRNA:   3'- gaCUGCC--AGGCGUAGCUGU-GGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 69858 0.77 0.286149
Target:  5'- gCUGACGa-CCGgGUCGGC-CCGGCGCu -3'
miRNA:   3'- -GACUGCcaGGCgUAGCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 33556 0.76 0.341922
Target:  5'- uCUGcACGGagCGCAUCGACGa-GGCGCa -3'
miRNA:   3'- -GAC-UGCCagGCGUAGCUGUggCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 25873 0.75 0.380578
Target:  5'- -cGACGG-CCGCGaggcCGACGCCGGCu- -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 114573 0.81 0.173953
Target:  5'- gCUGACGGUCgUGCGcUUGGCGCCGcGCGCc -3'
miRNA:   3'- -GACUGCCAG-GCGU-AGCUGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 31601 0.8 0.201279
Target:  5'- ----gGGUCCggagcuccgucgGCGUCGGCGCCGGCGCg -3'
miRNA:   3'- gacugCCAGG------------CGUAGCUGUGGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.