miRNA display CGI


Results 1 - 20 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 117729 0.66 0.834784
Target:  5'- cCUGAcCGGcgcccgcgcgcucUCCGCGUCucucggcccccccgGACgcgccccccggccgcGCCGGCGCg -3'
miRNA:   3'- -GACU-GCC-------------AGGCGUAG--------------CUG---------------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 7720 0.66 0.834784
Target:  5'- -cGGCGGgggucUCCGCGccgggCGAgGCCgggGGCGCc -3'
miRNA:   3'- gaCUGCC-----AGGCGUa----GCUgUGG---CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 25348 0.66 0.834784
Target:  5'- -cGGCGGUggGCggCGACcacgggcucGCCGGCGUc -3'
miRNA:   3'- gaCUGCCAggCGuaGCUG---------UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 31598 0.66 0.834784
Target:  5'- -gGACGGgCCGCG-CGccGCGCaggGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUaGC--UGUGg--CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 121895 0.66 0.842735
Target:  5'- -gGGCGGggCCGCA--GGC-CgGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUagCUGuGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 75905 0.66 0.842735
Target:  5'- uUGGCGuucgCCGCGagGGCcuGCuCGGCGCg -3'
miRNA:   3'- gACUGCca--GGCGUagCUG--UG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 129088 0.66 0.834784
Target:  5'- -aGGCGG-CgGCggCGGCggGCgGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGuaGCUG--UGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 156179 0.66 0.872672
Target:  5'- -cGGCGGgCgCGCG-CGagaGCGCCGcGCGCg -3'
miRNA:   3'- gaCUGCCaG-GCGUaGC---UGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 93744 0.66 0.834784
Target:  5'- -aGACGGggccgCCGCGgagucguuucCGGC-CCGGgGCg -3'
miRNA:   3'- gaCUGCCa----GGCGUa---------GCUGuGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 46308 0.66 0.842735
Target:  5'- -cGGCGGgCCGCGcgggCGACAgCCGcCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-GGCcGCG- -5'
21383 3' -58.1 NC_004812.1 + 141187 0.66 0.834784
Target:  5'- gCUGGCGGUugcgcucgcCCGCGUucCGGCggGCgGGgGCg -3'
miRNA:   3'- -GACUGCCA---------GGCGUA--GCUG--UGgCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 93839 0.66 0.833979
Target:  5'- cCUGuuccCGGcugCCGCGUCggaccagGACcCCGGUGCg -3'
miRNA:   3'- -GACu---GCCa--GGCGUAG-------CUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 49254 0.66 0.842735
Target:  5'- -gGGC-GUCCGgGgcCGACuCCGGCGCc -3'
miRNA:   3'- gaCUGcCAGGCgUa-GCUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 155487 0.66 0.842735
Target:  5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3'
miRNA:   3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 96203 0.66 0.842735
Target:  5'- ----gGGUCCagacgcGCGUCGACGCgCaGCGCa -3'
miRNA:   3'- gacugCCAGG------CGUAGCUGUG-GcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 136174 0.66 0.834784
Target:  5'- uUGGC-GUCCGCG--GACGuCCGGgGCa -3'
miRNA:   3'- gACUGcCAGGCGUagCUGU-GGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 41960 0.66 0.833979
Target:  5'- gUGGCGGgCCGCAcCGACguccucaucacggGCCaGCGUu -3'
miRNA:   3'- gACUGCCaGGCGUaGCUG-------------UGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 61445 0.66 0.834784
Target:  5'- uCUGAgGGcCCGC--CGAgACCGGCcggGCu -3'
miRNA:   3'- -GACUgCCaGGCGuaGCUgUGGCCG---CG- -5'
21383 3' -58.1 NC_004812.1 + 131528 0.66 0.834784
Target:  5'- -cGGCGGcgCCGCcccGUCGAggagccCGCCGccGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCG---UAGCU------GUGGC--CGCG- -5'
21383 3' -58.1 NC_004812.1 + 19767 0.66 0.834784
Target:  5'- -cGGgGGUCCcagGCGaCGcGCGCCGGgGCg -3'
miRNA:   3'- gaCUgCCAGG---CGUaGC-UGUGGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.