miRNA display CGI


Results 1 - 20 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 156455 0.72 0.512459
Target:  5'- -cGGCGGgCCGCGggcgCGGCGgCgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGGCGUa---GCUGU-G-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 156228 0.71 0.609872
Target:  5'- -gGGCGGggcgCCGCGggauGCGCCGGCGg -3'
miRNA:   3'- gaCUGCCa---GGCGUagc-UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 156179 0.66 0.872672
Target:  5'- -cGGCGGgCgCGCG-CGagaGCGCCGcGCGCg -3'
miRNA:   3'- gaCUGCCaG-GCGUaGC---UGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 156139 0.66 0.872672
Target:  5'- -aGGCGcGUgCGCA-CGcaggcGCGCCGGCGg -3'
miRNA:   3'- gaCUGC-CAgGCGUaGC-----UGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 156135 0.72 0.531526
Target:  5'- gUGACGGgCCGCGcgGACGCgGGgCGCg -3'
miRNA:   3'- gACUGCCaGGCGUagCUGUGgCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 156054 0.67 0.78368
Target:  5'- --cGCGG-CCGCG-CG-CGCCGGgGCg -3'
miRNA:   3'- gacUGCCaGGCGUaGCuGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 155487 0.66 0.842735
Target:  5'- cCUGGCGGcCgGCuUCugccuCGCCGGCGg -3'
miRNA:   3'- -GACUGCCaGgCGuAGcu---GUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 155201 0.67 0.809916
Target:  5'- --cGCGG-CCGcCGUCGGgGCCGGgcCGCg -3'
miRNA:   3'- gacUGCCaGGC-GUAGCUgUGGCC--GCG- -5'
21383 3' -58.1 NC_004812.1 + 155143 0.66 0.842735
Target:  5'- -cGGCGGggggCCGgGUCGAgGgCGGuCGUg -3'
miRNA:   3'- gaCUGCCa---GGCgUAGCUgUgGCC-GCG- -5'
21383 3' -58.1 NC_004812.1 + 155127 0.7 0.619802
Target:  5'- -cGGCGcUCCGCcgCcgcccgccgagGACGCCGGCGUc -3'
miRNA:   3'- gaCUGCcAGGCGuaG-----------CUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 155089 0.66 0.865479
Target:  5'- -cGGCGG-CgGCAugcccUCGcGCGgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGU-----AGC-UGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 154970 0.69 0.698943
Target:  5'- -gGACGGgcgggCCGCG-CGGgACCcGCGCg -3'
miRNA:   3'- gaCUGCCa----GGCGUaGCUgUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 154941 0.66 0.865479
Target:  5'- -gGGCGGgCCGCGgcgccgCGGCcaacgggggAgCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGCGUa-----GCUG---------UgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 154560 0.68 0.756289
Target:  5'- -cGGCGGUCCGaCGUgaaGugGCUGGCc- -3'
miRNA:   3'- gaCUGCCAGGC-GUAg--CugUGGCCGcg -5'
21383 3' -58.1 NC_004812.1 + 154234 0.66 0.850505
Target:  5'- cCUGGCgcuGGaCCGC---GACGCCGcGCGCg -3'
miRNA:   3'- -GACUG---CCaGGCGuagCUGUGGC-CGCG- -5'
21383 3' -58.1 NC_004812.1 + 154046 0.67 0.792565
Target:  5'- -aGGCGGggUCGuCGUCGACGaCGGCGg -3'
miRNA:   3'- gaCUGCCa-GGC-GUAGCUGUgGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 153980 0.74 0.422048
Target:  5'- -cGGCgcaGGUCuCGCGgggCGGgGCCGGCGCg -3'
miRNA:   3'- gaCUG---CCAG-GCGUa--GCUgUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 153904 0.67 0.801312
Target:  5'- gCUGGCcuccGG-CCGCGUCuucgGGC-CCGGCGUc -3'
miRNA:   3'- -GACUG----CCaGGCGUAG----CUGuGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 153715 0.68 0.774667
Target:  5'- -gGGCGGUCCacccagaugaaGUccaCGGCgguGCCGGCGCg -3'
miRNA:   3'- gaCUGCCAGG-----------CGua-GCUG---UGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 153628 0.68 0.737498
Target:  5'- aCUGGacCGGcCCGCccgacgucUCGGCGCUgGGCGCg -3'
miRNA:   3'- -GACU--GCCaGGCGu-------AGCUGUGG-CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.