miRNA display CGI


Results 21 - 40 of 550 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21383 3' -58.1 NC_004812.1 + 3394 0.71 0.570372
Target:  5'- -gGGCGG-CgGCGgagGGCGCCGGCGUg -3'
miRNA:   3'- gaCUGCCaGgCGUag-CUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 3493 0.68 0.737498
Target:  5'- -cGGCGGgCCGCGggcgcgggccCGGgGCCGGCGg -3'
miRNA:   3'- gaCUGCCaGGCGUa---------GCUgUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 3580 0.66 0.834784
Target:  5'- -aGGCGG-CgGCggCGGCggGCgGGCGCg -3'
miRNA:   3'- gaCUGCCaGgCGuaGCUG--UGgCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 3646 0.67 0.818367
Target:  5'- -cGGCGccgcccgcGUCUGCGUCGGCcaGCagggGGCGCa -3'
miRNA:   3'- gaCUGC--------CAGGCGUAGCUG--UGg---CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 3694 0.74 0.448197
Target:  5'- uCUGGaagagcaGGUCgGCGgcggCGGCGCCGGCGg -3'
miRNA:   3'- -GACUg------CCAGgCGUa---GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 3736 0.69 0.679315
Target:  5'- cCUGGCGcGggCCGCG-CGccaGCAgCGGCGCg -3'
miRNA:   3'- -GACUGC-Ca-GGCGUaGC---UGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 3805 0.69 0.727968
Target:  5'- -cGACGG-CgGCcUCGGCgccGCCGGCGa -3'
miRNA:   3'- gaCUGCCaGgCGuAGCUG---UGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 3922 0.73 0.493678
Target:  5'- -cGGCGGggCCGCGcggCGGCgGCaCGGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCGUa--GCUG-UG-GCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 4101 0.72 0.550845
Target:  5'- -cGGCGGggCCGUccucccCGGCGCCGGCGg -3'
miRNA:   3'- gaCUGCCa-GGCGua----GCUGUGGCCGCg -5'
21383 3' -58.1 NC_004812.1 + 4146 0.67 0.78368
Target:  5'- -gGGCGG-CCGCcaggCGGCGCU-GCGCg -3'
miRNA:   3'- gaCUGCCaGGCGua--GCUGUGGcCGCG- -5'
21383 3' -58.1 NC_004812.1 + 4239 0.71 0.590064
Target:  5'- -cGGCGG-CgGCggCGGCGgCGGCGCc -3'
miRNA:   3'- gaCUGCCaGgCGuaGCUGUgGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 4656 0.7 0.619802
Target:  5'- -cGGCGG-CCuCGUa-GCGCCGGCGCg -3'
miRNA:   3'- gaCUGCCaGGcGUAgcUGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 4669 0.71 0.590064
Target:  5'- -cGcCGG-CCGUcgCG-CGCCGGCGCc -3'
miRNA:   3'- gaCuGCCaGGCGuaGCuGUGGCCGCG- -5'
21383 3' -58.1 NC_004812.1 + 4753 0.68 0.756289
Target:  5'- -gGGCGG-CgGC-UCGGCGCCGG-GCc -3'
miRNA:   3'- gaCUGCCaGgCGuAGCUGUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 4927 0.69 0.698943
Target:  5'- gCUG-CGGcCCGCGgaggCGGCGCUGGaggGCg -3'
miRNA:   3'- -GACuGCCaGGCGUa---GCUGUGGCCg--CG- -5'
21383 3' -58.1 NC_004812.1 + 5306 0.66 0.865479
Target:  5'- -cGGCGaGcUCCGCgagcgcGUCGucCGCCGGgGCg -3'
miRNA:   3'- gaCUGC-C-AGGCG------UAGCu-GUGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 5597 0.67 0.781888
Target:  5'- -cGGCGGgguccugcgaggCCGCGUCGuaguagaACCGGgGCc -3'
miRNA:   3'- gaCUGCCa-----------GGCGUAGCug-----UGGCCgCG- -5'
21383 3' -58.1 NC_004812.1 + 5719 0.69 0.727968
Target:  5'- -cGGgGGUCUGCcgCGggaggaggGCGCCgGGCGCc -3'
miRNA:   3'- gaCUgCCAGGCGuaGC--------UGUGG-CCGCG- -5'
21383 3' -58.1 NC_004812.1 + 5910 0.75 0.38784
Target:  5'- -cGGCGGgcggagCCGCcgCGACGCCGccccggaGCGCg -3'
miRNA:   3'- gaCUGCCa-----GGCGuaGCUGUGGC-------CGCG- -5'
21383 3' -58.1 NC_004812.1 + 6019 0.66 0.834784
Target:  5'- -cGGCGGcgCCGCcccGUCGAggagccCGCCGccGCGCg -3'
miRNA:   3'- gaCUGCCa-GGCG---UAGCU------GUGGC--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.