miRNA display CGI


Results 41 - 60 of 457 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 121552 0.66 0.93708
Target:  5'- cGCGGcUGGUGgcGcgcGGCAUCCGCuCCc -3'
miRNA:   3'- aCGUCuGCCACuuC---UCGUGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 98246 0.66 0.93708
Target:  5'- gGCGGcGCGGcccUGGAGgccGGgACCCGCGCg -3'
miRNA:   3'- aCGUC-UGCC---ACUUC---UCgUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 74432 0.66 0.93708
Target:  5'- -cCAGuCGGUGuuggacGAGgGCCCGCGCg -3'
miRNA:   3'- acGUCuGCCACuu----CUCgUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 18830 0.66 0.93708
Target:  5'- gGCGGGCGGcGGuu-GCGCgCCGC-CCg -3'
miRNA:   3'- aCGUCUGCCaCUucuCGUG-GGUGuGG- -5'
21384 5' -55 NC_004812.1 + 31593 0.66 0.932598
Target:  5'- cGCgaGGACGGgccgcgcgccgcgcAGGGGCGCCUccaGCGCCg -3'
miRNA:   3'- aCG--UCUGCCac------------UUCUCGUGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 91533 0.66 0.932088
Target:  5'- cUGCGGACGc-GAGcccgcguccgccGAGUACCCGCGgCg -3'
miRNA:   3'- -ACGUCUGCcaCUU------------CUCGUGGGUGUgG- -5'
21384 5' -55 NC_004812.1 + 109458 0.66 0.932088
Target:  5'- --aGGGCGGcGcGGGGGCGCCCGCggGCUg -3'
miRNA:   3'- acgUCUGCCaC-UUCUCGUGGGUG--UGG- -5'
21384 5' -55 NC_004812.1 + 72344 0.66 0.932088
Target:  5'- cGCGGGgGGgagGggGGGCGgggggucuCCCGCGUCg -3'
miRNA:   3'- aCGUCUgCCa--CuuCUCGU--------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 60443 0.66 0.932088
Target:  5'- aGCGcGACGGcGAcGGGC-CCCACgacgGCCc -3'
miRNA:   3'- aCGU-CUGCCaCUuCUCGuGGGUG----UGG- -5'
21384 5' -55 NC_004812.1 + 48997 0.66 0.932088
Target:  5'- cGCAGAC-GUGAaccccGGcGGCcggGCCCACGCg -3'
miRNA:   3'- aCGUCUGcCACU-----UC-UCG---UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 40983 0.66 0.932088
Target:  5'- cUGCGGcCGGUcuguguccGAGGA-CGCCC-CACCc -3'
miRNA:   3'- -ACGUCuGCCA--------CUUCUcGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 124441 0.66 0.932088
Target:  5'- gGCAccCGGUccgcgcGGGGGCGCCC-CGCCg -3'
miRNA:   3'- aCGUcuGCCAc-----UUCUCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 144419 0.66 0.932088
Target:  5'- gGCGcGACGGcGGcucGGaAGUuCCCGCGCCg -3'
miRNA:   3'- aCGU-CUGCCaCU---UC-UCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 119296 0.66 0.932088
Target:  5'- cGCGccCGGcGAGGAGUGCCC-CACg -3'
miRNA:   3'- aCGUcuGCCaCUUCUCGUGGGuGUGg -5'
21384 5' -55 NC_004812.1 + 93715 0.66 0.932088
Target:  5'- gUGCAcGCGGUaGuAGGGCACgCGCGgCg -3'
miRNA:   3'- -ACGUcUGCCA-CuUCUCGUGgGUGUgG- -5'
21384 5' -55 NC_004812.1 + 65667 0.66 0.932088
Target:  5'- aGCcccGCGG--GAGAGCGCCCGCcaagGCCc -3'
miRNA:   3'- aCGuc-UGCCacUUCUCGUGGGUG----UGG- -5'
21384 5' -55 NC_004812.1 + 91010 0.66 0.932088
Target:  5'- aGUAGuCGGUguuGAGGGGCACgCGgugacuCACCg -3'
miRNA:   3'- aCGUCuGCCA---CUUCUCGUGgGU------GUGG- -5'
21384 5' -55 NC_004812.1 + 50478 0.66 0.930543
Target:  5'- gGCGGGCGcGUGuGGAcgccgggcgccgagGCGCUCAC-CCg -3'
miRNA:   3'- aCGUCUGC-CACuUCU--------------CGUGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 47983 0.66 0.926855
Target:  5'- gGUAGGCGGcc---AGCACgCGCGCCu -3'
miRNA:   3'- aCGUCUGCCacuucUCGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 33243 0.66 0.926855
Target:  5'- cGCggaGGACGG-GggGcGCGuCCC-CGCCg -3'
miRNA:   3'- aCG---UCUGCCaCuuCuCGU-GGGuGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.