miRNA display CGI


Results 21 - 40 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 19539 0.66 0.941831
Target:  5'- cGuCAGggcGCGGUGGAucGCgaaGCCCAgGCCg -3'
miRNA:   3'- aC-GUC---UGCCACUUcuCG---UGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 3326 0.66 0.941831
Target:  5'- aGgGGAgGGgcccGAGGGGC-CgCCGCGCCc -3'
miRNA:   3'- aCgUCUgCCa---CUUCUCGuG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 105152 0.66 0.941831
Target:  5'- gGUAG-UGGUGGccguAGCGCCC-CGCCu -3'
miRNA:   3'- aCGUCuGCCACUuc--UCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 41334 0.66 0.941831
Target:  5'- gGCc-GCGGgauGGAGCugGCCUACGCCu -3'
miRNA:   3'- aCGucUGCCacuUCUCG--UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 24445 0.66 0.941831
Target:  5'- gGCGGuugcuCGGguuGGGGCguuGCCCGCugCa -3'
miRNA:   3'- aCGUCu----GCCacuUCUCG---UGGGUGugG- -5'
21384 5' -55 NC_004812.1 + 155439 0.66 0.941831
Target:  5'- gGC-GACGGcGAcgagGGAGCggggggccggGCUCGCGCCg -3'
miRNA:   3'- aCGuCUGCCaCU----UCUCG----------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 73341 0.66 0.941831
Target:  5'- cGCGuGCGGcGAGcGGCGCCCcggccgACGCCu -3'
miRNA:   3'- aCGUcUGCCaCUUcUCGUGGG------UGUGG- -5'
21384 5' -55 NC_004812.1 + 83610 0.66 0.941831
Target:  5'- gUGCGuGACGcuguuUGAcucgcgcgagcGGGGCGCCgACGCCg -3'
miRNA:   3'- -ACGU-CUGCc----ACU-----------UCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 34227 0.66 0.941831
Target:  5'- aGgGGAgGGgcccGAGGGGC-CgCCGCGCCc -3'
miRNA:   3'- aCgUCUgCCa---CUUCUCGuG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 51892 0.66 0.941831
Target:  5'- cGUGGGCGcGUGgcGGcCACgCACGCCc -3'
miRNA:   3'- aCGUCUGC-CACuuCUcGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 60552 0.66 0.941831
Target:  5'- cGCGGAUcgagagggaGGgccgGcGGAGCAUgCGCACCc -3'
miRNA:   3'- aCGUCUG---------CCa---CuUCUCGUGgGUGUGG- -5'
21384 5' -55 NC_004812.1 + 55649 0.66 0.941831
Target:  5'- cGCGGACGuccgcgGcGGcGCGCCC-CGCCa -3'
miRNA:   3'- aCGUCUGCca----CuUCuCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 115180 0.66 0.941831
Target:  5'- gGCAGACGGaGuaaacGCACCCcccGCACa -3'
miRNA:   3'- aCGUCUGCCaCuucu-CGUGGG---UGUGg -5'
21384 5' -55 NC_004812.1 + 146759 0.66 0.941831
Target:  5'- gGCGGACGGUcGGcguGAGCgucgucgagGCCCAacgaggGCCg -3'
miRNA:   3'- aCGUCUGCCA-CUu--CUCG---------UGGGUg-----UGG- -5'
21384 5' -55 NC_004812.1 + 29937 0.66 0.941831
Target:  5'- gGCGcGAgGGagcGggGGGCcggGCUCGCGCCg -3'
miRNA:   3'- aCGU-CUgCCa--CuuCUCG---UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 132983 0.66 0.93708
Target:  5'- cGCGGACGcccgucuGGGCGCCCGgcCACUg -3'
miRNA:   3'- aCGUCUGCcacuu--CUCGUGGGU--GUGG- -5'
21384 5' -55 NC_004812.1 + 18830 0.66 0.93708
Target:  5'- gGCGGGCGGcGGuu-GCGCgCCGC-CCg -3'
miRNA:   3'- aCGUCUGCCaCUucuCGUG-GGUGuGG- -5'
21384 5' -55 NC_004812.1 + 98246 0.66 0.93708
Target:  5'- gGCGGcGCGGcccUGGAGgccGGgACCCGCGCg -3'
miRNA:   3'- aCGUC-UGCC---ACUUC---UCgUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 74432 0.66 0.93708
Target:  5'- -cCAGuCGGUGuuggacGAGgGCCCGCGCg -3'
miRNA:   3'- acGUCuGCCACuu----CUCgUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 121552 0.66 0.93708
Target:  5'- cGCGGcUGGUGgcGcgcGGCAUCCGCuCCc -3'
miRNA:   3'- aCGUCuGCCACuuC---UCGUGGGUGuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.