miRNA display CGI


Results 21 - 40 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 41334 0.66 0.941831
Target:  5'- gGCc-GCGGgauGGAGCugGCCUACGCCu -3'
miRNA:   3'- aCGucUGCCacuUCUCG--UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 100357 0.66 0.93708
Target:  5'- cGCGGggccACGGUucc-GGCGCCCGcCGCCg -3'
miRNA:   3'- aCGUC----UGCCAcuucUCGUGGGU-GUGG- -5'
21384 5' -55 NC_004812.1 + 31593 0.66 0.932598
Target:  5'- cGCgaGGACGGgccgcgcgccgcgcAGGGGCGCCUccaGCGCCg -3'
miRNA:   3'- aCG--UCUGCCac------------UUCUCGUGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 55649 0.66 0.941831
Target:  5'- cGCGGACGuccgcgGcGGcGCGCCC-CGCCa -3'
miRNA:   3'- aCGUCUGCca----CuUCuCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 74432 0.66 0.93708
Target:  5'- -cCAGuCGGUGuuggacGAGgGCCCGCGCg -3'
miRNA:   3'- acGUCuGCCACuu----CUCgUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 105949 0.66 0.941831
Target:  5'- gGCAGAagcaGGagcgaGAGGAGCGUCCGCgaaACCa -3'
miRNA:   3'- aCGUCUg---CCa----CUUCUCGUGGGUG---UGG- -5'
21384 5' -55 NC_004812.1 + 48764 0.66 0.93708
Target:  5'- cGCGGGCcugcuGGAGCGCCUGCcCCg -3'
miRNA:   3'- aCGUCUGccacuUCUCGUGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 60443 0.66 0.932088
Target:  5'- aGCGcGACGGcGAcGGGC-CCCACgacgGCCc -3'
miRNA:   3'- aCGU-CUGCCaCUuCUCGuGGGUG----UGG- -5'
21384 5' -55 NC_004812.1 + 50478 0.66 0.930543
Target:  5'- gGCGGGCGcGUGuGGAcgccgggcgccgagGCGCUCAC-CCg -3'
miRNA:   3'- aCGUCUGC-CACuUCU--------------CGUGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 36915 0.66 0.921379
Target:  5'- gGgGGACGGUGccGccAGCuCCCGCAgCCc -3'
miRNA:   3'- aCgUCUGCCACuuC--UCGuGGGUGU-GG- -5'
21384 5' -55 NC_004812.1 + 109458 0.66 0.932088
Target:  5'- --aGGGCGGcGcGGGGGCGCCCGCggGCUg -3'
miRNA:   3'- acgUCUGCCaC-UUCUCGUGGGUG--UGG- -5'
21384 5' -55 NC_004812.1 + 48997 0.66 0.932088
Target:  5'- cGCAGAC-GUGAaccccGGcGGCcggGCCCACGCg -3'
miRNA:   3'- aCGUCUGcCACU-----UC-UCG---UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 155439 0.66 0.941831
Target:  5'- gGC-GACGGcGAcgagGGAGCggggggccggGCUCGCGCCg -3'
miRNA:   3'- aCGuCUGCCaCU----UCUCG----------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 84092 0.66 0.921379
Target:  5'- aGCgGGACGGcGAccGAGCGCCgC-CGCCu -3'
miRNA:   3'- aCG-UCUGCCaCUu-CUCGUGG-GuGUGG- -5'
21384 5' -55 NC_004812.1 + 517 0.66 0.921379
Target:  5'- cGCGGcCGG-GgcGGGC-CCgCGCGCCc -3'
miRNA:   3'- aCGUCuGCCaCuuCUCGuGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 116510 0.66 0.926855
Target:  5'- cGCGGACGGac--GcGCGCCCGgcCGCCc -3'
miRNA:   3'- aCGUCUGCCacuuCuCGUGGGU--GUGG- -5'
21384 5' -55 NC_004812.1 + 144419 0.66 0.932088
Target:  5'- gGCGcGACGGcGGcucGGaAGUuCCCGCGCCg -3'
miRNA:   3'- aCGU-CUGCCaCU---UC-UCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 24445 0.66 0.941831
Target:  5'- gGCGGuugcuCGGguuGGGGCguuGCCCGCugCa -3'
miRNA:   3'- aCGUCu----GCCacuUCUCG---UGGGUGugG- -5'
21384 5' -55 NC_004812.1 + 4683 0.66 0.921379
Target:  5'- cGCcGGCGccgaGggGAGCGCCCccggccCGCCg -3'
miRNA:   3'- aCGuCUGCca--CuuCUCGUGGGu-----GUGG- -5'
21384 5' -55 NC_004812.1 + 3326 0.66 0.941831
Target:  5'- aGgGGAgGGgcccGAGGGGC-CgCCGCGCCc -3'
miRNA:   3'- aCgUCUgCCa---CUUCUCGuG-GGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.