miRNA display CGI


Results 21 - 40 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 4806 0.69 0.829227
Target:  5'- aGCGGGCGuaGAAG-GCGCCCGagGCCu -3'
miRNA:   3'- aCGUCUGCcaCUUCuCGUGGGUg-UGG- -5'
21384 5' -55 NC_004812.1 + 4849 0.73 0.6254
Target:  5'- cUGCGGGgcCGGgGAGGGGCcgcgGCCCGCGCg -3'
miRNA:   3'- -ACGUCU--GCCaCUUCUCG----UGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 5359 0.68 0.869047
Target:  5'- gGCGcGGCGGcGucGAugACCCACACCg -3'
miRNA:   3'- aCGU-CUGCCaCuuCUcgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 5421 0.74 0.563994
Target:  5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3'
miRNA:   3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 5438 0.72 0.635697
Target:  5'- -cCAGAgGGgcgGAAGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 5508 0.67 0.909705
Target:  5'- gGCGGccGCGGgGAAG-GCGuCCC-CGCCg -3'
miRNA:   3'- aCGUC--UGCCaCUUCuCGU-GGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 5555 0.72 0.666536
Target:  5'- -cCAGAgGGgcgGAGGAGgACUCGCGCCc -3'
miRNA:   3'- acGUCUgCCa--CUUCUCgUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 5717 0.69 0.829227
Target:  5'- gGCGGgggucugccGCGGgaGGAGGGCGCCgGgCGCCg -3'
miRNA:   3'- aCGUC---------UGCCa-CUUCUCGUGGgU-GUGG- -5'
21384 5' -55 NC_004812.1 + 6888 0.67 0.897075
Target:  5'- gGUAGACguguuguguguGGUGGucucGGGGCGCgCUGCGCCc -3'
miRNA:   3'- aCGUCUG-----------CCACU----UCUCGUG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 7495 0.69 0.803102
Target:  5'- cGCGGACGacc-GGGGCGCCCAaccccCGCCc -3'
miRNA:   3'- aCGUCUGCcacuUCUCGUGGGU-----GUGG- -5'
21384 5' -55 NC_004812.1 + 7553 0.69 0.811979
Target:  5'- cGgGGGCGGgcgcGggGGGCggucccGCCCcCACCg -3'
miRNA:   3'- aCgUCUGCCa---CuuCUCG------UGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 7682 0.68 0.861489
Target:  5'- aGCGGG-GGUGGGcGGGCGCgggggUCGCGCCg -3'
miRNA:   3'- aCGUCUgCCACUU-CUCGUG-----GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 7988 0.68 0.869047
Target:  5'- cGCGGGCgccGGUcaGggGGGCGcuCCCGCgACCc -3'
miRNA:   3'- aCGUCUG---CCA--CuuCUCGU--GGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 8694 0.75 0.484988
Target:  5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3'
miRNA:   3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5'
21384 5' -55 NC_004812.1 + 9279 0.69 0.828381
Target:  5'- gGCGGACGGgcaccagGAuacaccgAGAGUugaagcugGCCCACaACCa -3'
miRNA:   3'- aCGUCUGCCa------CU-------UCUCG--------UGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 10574 0.67 0.897075
Target:  5'- gGCGaGCGGUGccGGGGGCAUUUauGCGCCg -3'
miRNA:   3'- aCGUcUGCCAC--UUCUCGUGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 11701 0.78 0.329557
Target:  5'- cGguGACGGUGAuguagauGGAGUccucgcCCCACACCa -3'
miRNA:   3'- aCguCUGCCACU-------UCUCGu-----GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 11749 0.72 0.676771
Target:  5'- cGgGGACGucGAAccGCACCCACACCa -3'
miRNA:   3'- aCgUCUGCcaCUUcuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 11829 0.68 0.883512
Target:  5'- gUGUGGACGGUGuccccGGGAGCAaaCAggauCGCCg -3'
miRNA:   3'- -ACGUCUGCCAC-----UUCUCGUggGU----GUGG- -5'
21384 5' -55 NC_004812.1 + 12015 0.66 0.926855
Target:  5'- cGCAGACGaccugcucggcGUccGGcAGCACgCACGCCg -3'
miRNA:   3'- aCGUCUGC-----------CAcuUC-UCGUGgGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.