miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 517 0.66 0.921379
Target:  5'- cGCGGcCGG-GgcGGGC-CCgCGCGCCc -3'
miRNA:   3'- aCGUCuGCCaCuuCUCGuGG-GUGUGG- -5'
21384 5' -55 NC_004812.1 + 1331 0.65 0.946343
Target:  5'- cGCGGGCGGUccgcGGGCGgUC-CGCCg -3'
miRNA:   3'- aCGUCUGCCAcuu-CUCGUgGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 1486 0.79 0.301255
Target:  5'- gGCGGGCGGcgGcGGAGCgccggccgGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CuUCUCG--------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 2005 0.74 0.574148
Target:  5'- cGCcGGCGGUcgcucGGGGCGCCgACGCCg -3'
miRNA:   3'- aCGuCUGCCAcu---UCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 2342 0.66 0.926855
Target:  5'- cGCggaGGACGG-GggGcGCGuCCC-CGCCg -3'
miRNA:   3'- aCG---UCUGCCaCuuCuCGU-GGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 2438 0.73 0.60483
Target:  5'- cGCAGgcGCGGUGcGAGuGCGCCU-CGCCg -3'
miRNA:   3'- aCGUC--UGCCAC-UUCuCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 2856 0.67 0.909705
Target:  5'- gGCGcGACGccGAGGAcgccgugcGCGCCgGCACCg -3'
miRNA:   3'- aCGU-CUGCcaCUUCU--------CGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 3095 0.68 0.84575
Target:  5'- gGCGGGCGGggcgGggGAGgCGCC---GCCg -3'
miRNA:   3'- aCGUCUGCCa---CuuCUC-GUGGgugUGG- -5'
21384 5' -55 NC_004812.1 + 3135 0.67 0.915662
Target:  5'- gGCAG-CGGcGcguAGAGCACCaGCACg -3'
miRNA:   3'- aCGUCuGCCaCu--UCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 3223 0.72 0.673704
Target:  5'- cGCAGAccccaccuuccaccCGGcGcccgccAGGGGCGCCCGCGCCc -3'
miRNA:   3'- aCGUCU--------------GCCaC------UUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 3326 0.66 0.941831
Target:  5'- aGgGGAgGGgcccGAGGGGC-CgCCGCGCCc -3'
miRNA:   3'- aCgUCUgCCa---CUUCUCGuG-GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 3395 0.69 0.811979
Target:  5'- gGCGG-CGGcGGAGGGCGCCgGCGu- -3'
miRNA:   3'- aCGUCuGCCaCUUCUCGUGGgUGUgg -5'
21384 5' -55 NC_004812.1 + 3593 0.68 0.869047
Target:  5'- gGCGGGCGGgcgcgccggcGAGGAGCuCUUGCGCUu -3'
miRNA:   3'- aCGUCUGCCa---------CUUCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 3846 0.65 0.946343
Target:  5'- cGCAGGCGcau--GAGCACCaGCGCg -3'
miRNA:   3'- aCGUCUGCcacuuCUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 4188 0.68 0.84575
Target:  5'- cGUGGACGcc-GAGGGCGCCCccgcgGCGCCc -3'
miRNA:   3'- aCGUCUGCcacUUCUCGUGGG-----UGUGG- -5'
21384 5' -55 NC_004812.1 + 4310 0.68 0.869047
Target:  5'- cGCAGGCuGGUGAuGAGgaaGCCCuuCugCg -3'
miRNA:   3'- aCGUCUG-CCACUuCUCg--UGGGu-GugG- -5'
21384 5' -55 NC_004812.1 + 4449 0.71 0.707217
Target:  5'- cGguGcCGGUGAugaaGGAGCugCUguuGCGCCg -3'
miRNA:   3'- aCguCuGCCACU----UCUCGugGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 4583 0.76 0.447488
Target:  5'- aGCAGGCGcGUGAugAGGGCGuacugCCGCGCCg -3'
miRNA:   3'- aCGUCUGC-CACU--UCUCGUg----GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 4632 0.68 0.87639
Target:  5'- --gGGGCGGgggGgcGGGaCGCCCGCGCg -3'
miRNA:   3'- acgUCUGCCa--CuuCUC-GUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 4683 0.66 0.921379
Target:  5'- cGCcGGCGccgaGggGAGCGCCCccggccCGCCg -3'
miRNA:   3'- aCGuCUGCca--CuuCUCGUGGGu-----GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.