miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 156265 0.67 0.915662
Target:  5'- aGU-GAgGGUGgcGAGCGCguggaCGCACCu -3'
miRNA:   3'- aCGuCUgCCACuuCUCGUGg----GUGUGG- -5'
21384 5' -55 NC_004812.1 + 156180 0.71 0.71725
Target:  5'- gGCGGGCGcGcGcGAGAGCGCCgCGCGCg -3'
miRNA:   3'- aCGUCUGC-CaC-UUCUCGUGG-GUGUGg -5'
21384 5' -55 NC_004812.1 + 156066 0.67 0.890408
Target:  5'- cGCcgGGGCGGgaggcgGGAGGGCccgggcgcgcggGCCCGCcCCg -3'
miRNA:   3'- aCG--UCUGCCa-----CUUCUCG------------UGGGUGuGG- -5'
21384 5' -55 NC_004812.1 + 156007 0.71 0.70621
Target:  5'- cGCGGcGCGGggGAGGGGaCGCCCggggccgggggccGCGCCg -3'
miRNA:   3'- aCGUC-UGCCa-CUUCUC-GUGGG-------------UGUGG- -5'
21384 5' -55 NC_004812.1 + 155876 0.71 0.737084
Target:  5'- cGCGcGGCGGgggagggGAGGGGCgggGCCgGCGCCc -3'
miRNA:   3'- aCGU-CUGCCa------CUUCUCG---UGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 155855 0.7 0.782107
Target:  5'- -uCAGACGGgGAAGAGggucgcgccgccccCACCCcCGCCg -3'
miRNA:   3'- acGUCUGCCaCUUCUC--------------GUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 155726 0.71 0.727209
Target:  5'- gGUGGGgGGUGggGGGCGCgCGCGg- -3'
miRNA:   3'- aCGUCUgCCACuuCUCGUGgGUGUgg -5'
21384 5' -55 NC_004812.1 + 155439 0.66 0.941831
Target:  5'- gGC-GACGGcGAcgagGGAGCggggggccggGCUCGCGCCg -3'
miRNA:   3'- aCGuCUGCCaCU----UCUCG----------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 155381 0.75 0.504293
Target:  5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 155298 0.7 0.784888
Target:  5'- gGCGcGGCGGggcccgGggGucGGCGCCC-CGCCu -3'
miRNA:   3'- aCGU-CUGCCa-----CuuC--UCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 155170 0.72 0.635697
Target:  5'- gUGgGGGCGGgGAccGGGGC-CCCGCAUCa -3'
miRNA:   3'- -ACgUCUGCCaCU--UCUCGuGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 154738 0.7 0.775569
Target:  5'- gGCGGGCGGgggucgcgGAGGAGCggGCCgGgGCUg -3'
miRNA:   3'- aCGUCUGCCa-------CUUCUCG--UGGgUgUGG- -5'
21384 5' -55 NC_004812.1 + 154727 0.79 0.301255
Target:  5'- cGCGGGCGGggcccGGGCGCCCGgGCCa -3'
miRNA:   3'- aCGUCUGCCacuu-CUCGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 154542 0.7 0.784888
Target:  5'- gGUAGACGc-GggGGGCGcgcccccuccCCCGCGCCc -3'
miRNA:   3'- aCGUCUGCcaCuuCUCGU----------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 154163 0.72 0.676771
Target:  5'- cGCc-GCGGcGAGGcGCACUCGCACCg -3'
miRNA:   3'- aCGucUGCCaCUUCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 153644 0.77 0.385974
Target:  5'- aUGCGGGCGGgcggGGAGAGgGCgCGCACg -3'
miRNA:   3'- -ACGUCUGCCa---CUUCUCgUGgGUGUGg -5'
21384 5' -55 NC_004812.1 + 153465 0.67 0.9139
Target:  5'- gGgGGGCGGaGggGAGCgcggcggccgcgacACCCucccCACCa -3'
miRNA:   3'- aCgUCUGCCaCuuCUCG--------------UGGGu---GUGG- -5'
21384 5' -55 NC_004812.1 + 153354 0.66 0.920819
Target:  5'- -uCGGGCGGcgGggGcgcgGGCGCCCcuggcggGCGCCg -3'
miRNA:   3'- acGUCUGCCa-CuuC----UCGUGGG-------UGUGG- -5'
21384 5' -55 NC_004812.1 + 153157 0.67 0.912116
Target:  5'- cGCGGGCGGggGGccacggggaccacggGGGGCGCggCgGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CU---------------UCUCGUG--GgUGUGG- -5'
21384 5' -55 NC_004812.1 + 153058 0.67 0.903508
Target:  5'- cGCcGGCGcGcaaGAAGAGCcgGCCCgGCGCCg -3'
miRNA:   3'- aCGuCUGC-Ca--CUUCUCG--UGGG-UGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.