miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 136099 1.12 0.002322
Target:  5'- gUGCAGACGGUGAAGAGCACCCACACCu -3'
miRNA:   3'- -ACGUCUGCCACUUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 61313 0.84 0.150627
Target:  5'- cGCGGucguucaacGCGGUGGAGAGCcaccgcgGCCCACACCc -3'
miRNA:   3'- aCGUC---------UGCCACUUCUCG-------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 142272 0.82 0.194743
Target:  5'- gUGCAGGCgcaGGUGggGcAGCACCCcuACACCc -3'
miRNA:   3'- -ACGUCUG---CCACuuC-UCGUGGG--UGUGG- -5'
21384 5' -55 NC_004812.1 + 154727 0.79 0.301255
Target:  5'- cGCGGGCGGggcccGGGCGCCCGgGCCa -3'
miRNA:   3'- aCGUCUGCCacuu-CUCGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 1486 0.79 0.301255
Target:  5'- gGCGGGCGGcgGcGGAGCgccggccgGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CuUCUCG--------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 123826 0.79 0.301255
Target:  5'- cGCGGGCGGggcccGGGCGCCCGgGCCa -3'
miRNA:   3'- aCGUCUGCCacuu-CUCGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 126994 0.79 0.301255
Target:  5'- gGCGGGCGGcgGcGGAGCgccggccgGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CuUCUCG--------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 74367 0.79 0.308329
Target:  5'- cGCGGGCGGcGggGuccCGCCCGCGCCc -3'
miRNA:   3'- aCGUCUGCCaCuuCuc-GUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 11701 0.78 0.329557
Target:  5'- cGguGACGGUGAuguagauGGAGUccucgcCCCACACCa -3'
miRNA:   3'- aCguCUGCCACU-------UCUCGu-----GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 55693 0.78 0.337886
Target:  5'- cGguGGCGGUGGGcGcGCGCCUGCACCc -3'
miRNA:   3'- aCguCUGCCACUU-CuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 122743 0.78 0.35342
Target:  5'- aUGCGGGCGGgcgGGAGAGgGCgCGCACg -3'
miRNA:   3'- -ACGUCUGCCa--CUUCUCgUGgGUGUGg -5'
21384 5' -55 NC_004812.1 + 20089 0.78 0.361374
Target:  5'- aGCGGACGccucgGAGGAGCGCgCCGCGCg -3'
miRNA:   3'- aCGUCUGCca---CUUCUCGUG-GGUGUGg -5'
21384 5' -55 NC_004812.1 + 153644 0.77 0.385974
Target:  5'- aUGCGGGCGGgcggGGAGAGgGCgCGCACg -3'
miRNA:   3'- -ACGUCUGCCa---CUUCUCgUGgGUGUGg -5'
21384 5' -55 NC_004812.1 + 135794 0.77 0.385974
Target:  5'- cGCGGAUGGUGAcgaggcGGGCGCCgACGCg -3'
miRNA:   3'- aCGUCUGCCACUu-----CUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 96822 0.77 0.402976
Target:  5'- cGUAGAgGGUGAGGGcGcCGCCCcCACCg -3'
miRNA:   3'- aCGUCUgCCACUUCU-C-GUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 141722 0.76 0.420446
Target:  5'- cGUAGucGgGGUGggGuGCACCUGCACCc -3'
miRNA:   3'- aCGUC--UgCCACuuCuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 63061 0.76 0.420446
Target:  5'- cGCGGGCGG-GAcGGcacgccgccGCACCCGCGCCc -3'
miRNA:   3'- aCGUCUGCCaCUuCU---------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 56995 0.76 0.432943
Target:  5'- cUGCAGGCGGUGGugagcgGGGGCcugcggauccccgagGCCC-CGCCg -3'
miRNA:   3'- -ACGUCUGCCACU------UCUCG---------------UGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 145815 0.76 0.438365
Target:  5'- gUGUGGGCGGcGggGucGGCgGCCCACGCCc -3'
miRNA:   3'- -ACGUCUGCCaCuuC--UCG-UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 130091 0.76 0.447488
Target:  5'- aGCAGGCGcGUGAugAGGGCGuacugCCGCGCCg -3'
miRNA:   3'- aCGUCUGC-CACU--UCUCGUg----GGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.