miRNA display CGI


Results 21 - 40 of 457 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 4583 0.76 0.447488
Target:  5'- aGCAGGCGcGUGAugAGGGCGuacugCCGCGCCg -3'
miRNA:   3'- aCGUCUGC-CACU--UCUCGUg----GGUGUGG- -5'
21384 5' -55 NC_004812.1 + 149039 0.75 0.466042
Target:  5'- aUGCcGGCGGUGggG-GCGggaccgcccCCCGCGCCc -3'
miRNA:   3'- -ACGuCUGCCACuuCuCGU---------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 23531 0.75 0.466042
Target:  5'- aUGCcGGCGGUGggG-GCGggaccgcccCCCGCGCCc -3'
miRNA:   3'- -ACGuCUGCCACuuCuCGU---------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 108287 0.75 0.475468
Target:  5'- gGCGGGCGGgGucGGGCACC-ACGCCc -3'
miRNA:   3'- aCGUCUGCCaCuuCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 61584 0.75 0.475468
Target:  5'- cGCGGauccgGCGGUGGAGccccAGCACCUGCGCg -3'
miRNA:   3'- aCGUC-----UGCCACUUC----UCGUGGGUGUGg -5'
21384 5' -55 NC_004812.1 + 79332 0.75 0.475468
Target:  5'- aGCGGACGGUGcggcGGAGCucgGgCCugGCCg -3'
miRNA:   3'- aCGUCUGCCACu---UCUCG---UgGGugUGG- -5'
21384 5' -55 NC_004812.1 + 8694 0.75 0.484988
Target:  5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3'
miRNA:   3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5'
21384 5' -55 NC_004812.1 + 39595 0.75 0.484988
Target:  5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3'
miRNA:   3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5'
21384 5' -55 NC_004812.1 + 136500 0.75 0.494597
Target:  5'- cGUcuGGGCGGaGGAGAGCAUCUGCGCUa -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 110655 0.75 0.494597
Target:  5'- cGCGGGCGGgGAGGGGUcggagACCCAauaACCu -3'
miRNA:   3'- aCGUCUGCCaCUUCUCG-----UGGGUg--UGG- -5'
21384 5' -55 NC_004812.1 + 138043 0.75 0.504293
Target:  5'- gGCGGcgGCGGcgGcGGAGCggGCCCGCGCCg -3'
miRNA:   3'- aCGUC--UGCCa-CuUCUCG--UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 124480 0.75 0.504293
Target:  5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 155381 0.75 0.504293
Target:  5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 77133 0.74 0.532852
Target:  5'- gGCGGuCGGUGAGGAgGCcgggcggGCCCcCGCCg -3'
miRNA:   3'- aCGUCuGCCACUUCU-CG-------UGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 59777 0.74 0.533848
Target:  5'- gUGgGGcCGGUGggGgcGGCGCCCuCACCc -3'
miRNA:   3'- -ACgUCuGCCACuuC--UCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 74521 0.74 0.540834
Target:  5'- aGCAGGCGGcccagGGcgucGGcguucaucucccacGGCACCCGCGCCa -3'
miRNA:   3'- aCGUCUGCCa----CU----UC--------------UCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 99465 0.74 0.543838
Target:  5'- cGCgAGACGGgcgccuGCGCCCGCGCCc -3'
miRNA:   3'- aCG-UCUGCCacuucuCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 112895 0.74 0.543838
Target:  5'- gGCGagacGACGGcGAcGGAGCGCCCuCGCCg -3'
miRNA:   3'- aCGU----CUGCCaCU-UCUCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 130929 0.74 0.563994
Target:  5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3'
miRNA:   3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 19890 0.74 0.563994
Target:  5'- gGCGcGGCGGcgGggGAcGCggcgGCCCGCGCCg -3'
miRNA:   3'- aCGU-CUGCCa-CuuCU-CG----UGGGUGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.