miRNA display CGI


Results 1 - 20 of 457 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21384 5' -55 NC_004812.1 + 127946 0.73 0.60483
Target:  5'- cGCAGgcGCGGUGcGAGuGCGCCU-CGCCg -3'
miRNA:   3'- aCGUC--UGCCAC-UUCuCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 124480 0.75 0.504293
Target:  5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3'
miRNA:   3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5'
21384 5' -55 NC_004812.1 + 74521 0.74 0.540834
Target:  5'- aGCAGGCGGcccagGGcgucGGcguucaucucccacGGCACCCGCGCCa -3'
miRNA:   3'- aCGUCUGCCa----CU----UC--------------UCGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 112895 0.74 0.543838
Target:  5'- gGCGagacGACGGcGAcGGAGCGCCCuCGCCg -3'
miRNA:   3'- aCGU----CUGCCaCU-UCUCGUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 19890 0.74 0.563994
Target:  5'- gGCGcGGCGGcgGggGAcGCggcgGCCCGCGCCg -3'
miRNA:   3'- aCGU-CUGCCa-CuuCU-CG----UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 97323 0.74 0.563994
Target:  5'- gGCGGGCgGGUGccGcGCGCCCGCgACCc -3'
miRNA:   3'- aCGUCUG-CCACuuCuCGUGGGUG-UGG- -5'
21384 5' -55 NC_004812.1 + 130929 0.74 0.563994
Target:  5'- cGCGgacGACGGcGggGAcaGCGCCCGgGCCg -3'
miRNA:   3'- aCGU---CUGCCaCuuCU--CGUGGGUgUGG- -5'
21384 5' -55 NC_004812.1 + 127514 0.74 0.574148
Target:  5'- cGCcGGCGGUcgcucGGGGCGCCgACGCCg -3'
miRNA:   3'- aCGuCUGCCAcu---UCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 18659 0.73 0.60483
Target:  5'- cGCAGACGGccaUGuccacGGCGCCCGcCGCCu -3'
miRNA:   3'- aCGUCUGCC---ACuuc--UCGUGGGU-GUGG- -5'
21384 5' -55 NC_004812.1 + 8694 0.75 0.484988
Target:  5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3'
miRNA:   3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5'
21384 5' -55 NC_004812.1 + 108287 0.75 0.475468
Target:  5'- gGCGGGCGGgGucGGGCACC-ACGCCc -3'
miRNA:   3'- aCGUCUGCCaCuuCUCGUGGgUGUGG- -5'
21384 5' -55 NC_004812.1 + 149039 0.75 0.466042
Target:  5'- aUGCcGGCGGUGggG-GCGggaccgcccCCCGCGCCc -3'
miRNA:   3'- -ACGuCUGCCACuuCuCGU---------GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 126994 0.79 0.301255
Target:  5'- gGCGGGCGGcgGcGGAGCgccggccgGCCCGCGCCg -3'
miRNA:   3'- aCGUCUGCCa-CuUCUCG--------UGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 74367 0.79 0.308329
Target:  5'- cGCGGGCGGcGggGuccCGCCCGCGCCc -3'
miRNA:   3'- aCGUCUGCCaCuuCuc-GUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 11701 0.78 0.329557
Target:  5'- cGguGACGGUGAuguagauGGAGUccucgcCCCACACCa -3'
miRNA:   3'- aCguCUGCCACU-------UCUCGu-----GGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 122743 0.78 0.35342
Target:  5'- aUGCGGGCGGgcgGGAGAGgGCgCGCACg -3'
miRNA:   3'- -ACGUCUGCCa--CUUCUCgUGgGUGUGg -5'
21384 5' -55 NC_004812.1 + 135794 0.77 0.385974
Target:  5'- cGCGGAUGGUGAcgaggcGGGCGCCgACGCg -3'
miRNA:   3'- aCGUCUGCCACUu-----CUCGUGGgUGUGg -5'
21384 5' -55 NC_004812.1 + 96822 0.77 0.402976
Target:  5'- cGUAGAgGGUGAGGGcGcCGCCCcCACCg -3'
miRNA:   3'- aCGUCUgCCACUUCU-C-GUGGGuGUGG- -5'
21384 5' -55 NC_004812.1 + 63061 0.76 0.420446
Target:  5'- cGCGGGCGG-GAcGGcacgccgccGCACCCGCGCCc -3'
miRNA:   3'- aCGUCUGCCaCUuCU---------CGUGGGUGUGG- -5'
21384 5' -55 NC_004812.1 + 130091 0.76 0.447488
Target:  5'- aGCAGGCGcGUGAugAGGGCGuacugCCGCGCCg -3'
miRNA:   3'- aCGUCUGC-CACU--UCUCGUg----GGUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.