Results 1 - 20 of 457 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21384 | 5' | -55 | NC_004812.1 | + | 136099 | 1.12 | 0.002322 |
Target: 5'- gUGCAGACGGUGAAGAGCACCCACACCu -3' miRNA: 3'- -ACGUCUGCCACUUCUCGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 136500 | 0.75 | 0.494597 |
Target: 5'- cGUcuGGGCGGaGGAGAGCAUCUGCGCUa -3' miRNA: 3'- aCG--UCUGCCaCUUCUCGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 155381 | 0.75 | 0.504293 |
Target: 5'- cGCccGGGCGGgGAGGAGCcCCCgcgGCGCCg -3' miRNA: 3'- aCG--UCUGCCaCUUCUCGuGGG---UGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 32232 | 0.65 | 0.946343 |
Target: 5'- cGCGGGCGGUccgcGGGCGgUC-CGCCg -3' miRNA: 3'- aCGUCUGCCAcuu-CUCGUgGGuGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 154727 | 0.79 | 0.301255 |
Target: 5'- cGCGGGCGGggcccGGGCGCCCGgGCCa -3' miRNA: 3'- aCGUCUGCCacuu-CUCGUGGGUgUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 55693 | 0.78 | 0.337886 |
Target: 5'- cGguGGCGGUGGGcGcGCGCCUGCACCc -3' miRNA: 3'- aCguCUGCCACUU-CuCGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 153644 | 0.77 | 0.385974 |
Target: 5'- aUGCGGGCGGgcggGGAGAGgGCgCGCACg -3' miRNA: 3'- -ACGUCUGCCa---CUUCUCgUGgGUGUGg -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 141722 | 0.76 | 0.420446 |
Target: 5'- cGUAGucGgGGUGggGuGCACCUGCACCc -3' miRNA: 3'- aCGUC--UgCCACuuCuCGUGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 4583 | 0.76 | 0.447488 |
Target: 5'- aGCAGGCGcGUGAugAGGGCGuacugCCGCGCCg -3' miRNA: 3'- aCGUCUGC-CACU--UCUCGUg----GGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 110655 | 0.75 | 0.494597 |
Target: 5'- cGCGGGCGGgGAGGGGUcggagACCCAauaACCu -3' miRNA: 3'- aCGUCUGCCaCUUCUCG-----UGGGUg--UGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 61584 | 0.75 | 0.475468 |
Target: 5'- cGCGGauccgGCGGUGGAGccccAGCACCUGCGCg -3' miRNA: 3'- aCGUC-----UGCCACUUC----UCGUGGGUGUGg -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 145815 | 0.76 | 0.438365 |
Target: 5'- gUGUGGGCGGcGggGucGGCgGCCCACGCCc -3' miRNA: 3'- -ACGUCUGCCaCuuC--UCG-UGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 61313 | 0.84 | 0.150627 |
Target: 5'- cGCGGucguucaacGCGGUGGAGAGCcaccgcgGCCCACACCc -3' miRNA: 3'- aCGUC---------UGCCACUUCUCG-------UGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 79332 | 0.75 | 0.475468 |
Target: 5'- aGCGGACGGUGcggcGGAGCucgGgCCugGCCg -3' miRNA: 3'- aCGUCUGCCACu---UCUCG---UgGGugUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 142272 | 0.82 | 0.194743 |
Target: 5'- gUGCAGGCgcaGGUGggGcAGCACCCcuACACCc -3' miRNA: 3'- -ACGUCUG---CCACuuC-UCGUGGG--UGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 56995 | 0.76 | 0.432943 |
Target: 5'- cUGCAGGCGGUGGugagcgGGGGCcugcggauccccgagGCCC-CGCCg -3' miRNA: 3'- -ACGUCUGCCACU------UCUCG---------------UGGGuGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 39595 | 0.75 | 0.484988 |
Target: 5'- gGcCGGGCGGgGAAGAGCACUCagcuuguuuACGCCa -3' miRNA: 3'- aC-GUCUGCCaCUUCUCGUGGG---------UGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 138043 | 0.75 | 0.504293 |
Target: 5'- gGCGGcgGCGGcgGcGGAGCggGCCCGCGCCg -3' miRNA: 3'- aCGUC--UGCCa-CuUCUCG--UGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 1486 | 0.79 | 0.301255 |
Target: 5'- gGCGGGCGGcgGcGGAGCgccggccgGCCCGCGCCg -3' miRNA: 3'- aCGUCUGCCa-CuUCUCG--------UGGGUGUGG- -5' |
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21384 | 5' | -55 | NC_004812.1 | + | 20089 | 0.78 | 0.361374 |
Target: 5'- aGCGGACGccucgGAGGAGCGCgCCGCGCg -3' miRNA: 3'- aCGUCUGCca---CUUCUCGUG-GGUGUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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