Results 61 - 80 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 100017 | 0.67 | 0.769161 |
Target: 5'- cGCGCCGcGCGaucGUCGCUGCAuggcGGCCg- -3' miRNA: 3'- cUGUGGU-UGCa--CAGCGACGU----CCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 125257 | 0.67 | 0.769161 |
Target: 5'- cGCGCCGGCGgcccggGcUCGCgGCGGGCgCGc -3' miRNA: 3'- cUGUGGUUGCa-----C-AGCGaCGUCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 27350 | 0.67 | 0.769161 |
Target: 5'- cGGCGCCGcCGcGcCGCUGCuggcgcgcGGCCCGc -3' miRNA: 3'- -CUGUGGUuGCaCaGCGACGu-------CCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 109251 | 0.67 | 0.768222 |
Target: 5'- uGACGCCGAgggaggcCGUGUUGCgggGCgcgaccgcagAGGCCUAc -3' miRNA: 3'- -CUGUGGUU-------GCACAGCGa--CG----------UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 95663 | 0.68 | 0.75016 |
Target: 5'- cGAC-CCGACGUGUcggCGCUGUAcGGCagCCGc -3' miRNA: 3'- -CUGuGGUUGCACA---GCGACGU-CCG--GGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 95563 | 0.68 | 0.75016 |
Target: 5'- cGACGCCGACGUGgcggucUCGCcGCucgucgucGGCCUc -3' miRNA: 3'- -CUGUGGUUGCAC------AGCGaCGu-------CCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 31623 | 0.68 | 0.75016 |
Target: 5'- cGGCGCCGGCGcgGUCGCcgGCGGGg--- -3' miRNA: 3'- -CUGUGGUUGCa-CAGCGa-CGUCCgggu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 82818 | 0.68 | 0.75016 |
Target: 5'- gGGCGCCGGCGcccgccCGCUcGCGGaGCCCGc -3' miRNA: 3'- -CUGUGGUUGCaca---GCGA-CGUC-CGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 722 | 0.68 | 0.75016 |
Target: 5'- cGGCGCCGGCGcgGUCGCcgGCGGGg--- -3' miRNA: 3'- -CUGUGGUUGCa-CAGCGa-CGUCCgggu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 20302 | 0.68 | 0.75016 |
Target: 5'- cGCGCCGGCGcagCGCgcgcGCAGGCaCCGc -3' miRNA: 3'- cUGUGGUUGCacaGCGa---CGUCCG-GGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 33672 | 0.68 | 0.747273 |
Target: 5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3' miRNA: 3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 2771 | 0.68 | 0.747273 |
Target: 5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3' miRNA: 3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 1104 | 0.68 | 0.7405 |
Target: 5'- uGC-CCGGCGgcccggGUCGCUucGCcgGGGCCCAu -3' miRNA: 3'- cUGuGGUUGCa-----CAGCGA--CG--UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 32005 | 0.68 | 0.7405 |
Target: 5'- uGC-CCGGCGgcccggGUCGCUucGCcgGGGCCCAu -3' miRNA: 3'- cUGuGGUUGCa-----CAGCGA--CG--UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 19579 | 0.68 | 0.7405 |
Target: 5'- cGCACUGGgGUGUguccuggaucgcCGCcagGCGGGCCCAc -3' miRNA: 3'- cUGUGGUUgCACA------------GCGa--CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 96174 | 0.68 | 0.7405 |
Target: 5'- gGGCGgCGGCGaggugGUCGCgccggaGCGGGUCCAg -3' miRNA: 3'- -CUGUgGUUGCa----CAGCGa-----CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 54647 | 0.68 | 0.7405 |
Target: 5'- -uCACC-ACGgggGUCGCcGCcgcgGGGCCCAg -3' miRNA: 3'- cuGUGGuUGCa--CAGCGaCG----UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 91314 | 0.68 | 0.730747 |
Target: 5'- gGGCACCug---GUCGCgGCGGGCCa- -3' miRNA: 3'- -CUGUGGuugcaCAGCGaCGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 47313 | 0.68 | 0.730747 |
Target: 5'- cGGCGCguACGUGcgggCGCgcagGUAGGCCUc -3' miRNA: 3'- -CUGUGguUGCACa---GCGa---CGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 4914 | 0.68 | 0.730747 |
Target: 5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3' miRNA: 3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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