miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 49071 0.67 0.79673
Target:  5'- -cCGCCGACGUGcUCGUcGCccAGGCCa- -3'
miRNA:   3'- cuGUGGUUGCAC-AGCGaCG--UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 2004 0.67 0.79673
Target:  5'- -cCGCCGGCG-GUCGCUcgGGGCgCCGa -3'
miRNA:   3'- cuGUGGUUGCaCAGCGAcgUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 59157 0.67 0.79673
Target:  5'- uGGCGCCGuccgACGgg-CGCagGCAGGCCUu -3'
miRNA:   3'- -CUGUGGU----UGCacaGCGa-CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 142585 0.67 0.79673
Target:  5'- uGACgGCCGugGUGUacUGCUGguGGaugaCCAa -3'
miRNA:   3'- -CUG-UGGUugCACA--GCGACguCCg---GGU- -5'
21385 5' -57.6 NC_004812.1 + 55361 0.67 0.787677
Target:  5'- -cCGCCuGACGg--CGCUGC-GGCCCGu -3'
miRNA:   3'- cuGUGG-UUGCacaGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3441 0.67 0.787677
Target:  5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3'
miRNA:   3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3718 0.67 0.787677
Target:  5'- cGGCGCCGGCGgagCGCaccuggcGCGGGCCg- -3'
miRNA:   3'- -CUGUGGUUGCacaGCGa------CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 68900 0.67 0.787677
Target:  5'- aGGCAcagcCCGAUGccGcCGCUGCGGGCCa- -3'
miRNA:   3'- -CUGU----GGUUGCa-CaGCGACGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 129226 0.67 0.787677
Target:  5'- cGGCGCCGGCGgagCGCaccuggcGCGGGCCg- -3'
miRNA:   3'- -CUGUGGUUGCacaGCGa------CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 128949 0.67 0.787677
Target:  5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3'
miRNA:   3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 142914 0.67 0.787677
Target:  5'- -cCGCCAGCcccUC-CUGCGGGCCCGc -3'
miRNA:   3'- cuGUGGUUGcacAGcGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138712 0.67 0.787677
Target:  5'- gGACgACC-GCGg--CGCgGCGGGCCCGc -3'
miRNA:   3'- -CUG-UGGuUGCacaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 112526 0.67 0.778484
Target:  5'- uACGCCAccGCG-GUC-CUGCGGGCgCCc -3'
miRNA:   3'- cUGUGGU--UGCaCAGcGACGUCCG-GGu -5'
21385 5' -57.6 NC_004812.1 + 3480 0.67 0.778484
Target:  5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3'
miRNA:   3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 128988 0.67 0.778484
Target:  5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3'
miRNA:   3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 23508 0.67 0.778484
Target:  5'- cGCACU-ACGUGcgggUGCUGCugGGGCCCc -3'
miRNA:   3'- cUGUGGuUGCACa---GCGACG--UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 113384 0.67 0.777557
Target:  5'- aGCGCCGggucuccugggagACGcUGgCGCUGCAcGGCCCc -3'
miRNA:   3'- cUGUGGU-------------UGC-ACaGCGACGU-CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 27350 0.67 0.769161
Target:  5'- cGGCGCCGcCGcGcCGCUGCuggcgcgcGGCCCGc -3'
miRNA:   3'- -CUGUGGUuGCaCaGCGACGu-------CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 156158 0.67 0.769161
Target:  5'- cGCGCCGGCGgcccggGcUCGCgGCGGGCgCGc -3'
miRNA:   3'- cUGUGGUUGCa-----C-AGCGaCGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 43851 0.67 0.769161
Target:  5'- cGGCGCCGACGUccgggCGCgGCGGcGCCg- -3'
miRNA:   3'- -CUGUGGUUGCAca---GCGaCGUC-CGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.