miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 119416 0.66 0.822971
Target:  5'- cGGC-CCcGCGcugcUGaCGCUGCAGGUCCu -3'
miRNA:   3'- -CUGuGGuUGC----ACaGCGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 65764 0.66 0.822971
Target:  5'- cGGCGCCGGCuuccgCGCcGCGGGCgCCGg -3'
miRNA:   3'- -CUGUGGUUGcaca-GCGaCGUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 21412 0.66 0.822971
Target:  5'- cGCGCCGACGcGUCGCaGC--GCCCc -3'
miRNA:   3'- cUGUGGUUGCaCAGCGaCGucCGGGu -5'
21385 5' -57.6 NC_004812.1 + 155274 0.66 0.822971
Target:  5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3'
miRNA:   3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 29766 0.66 0.822971
Target:  5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3'
miRNA:   3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 17907 0.66 0.822971
Target:  5'- cGCGCCcGCG-GUCGUccggGCgcgAGGCCCGg -3'
miRNA:   3'- cUGUGGuUGCaCAGCGa---CG---UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 126674 0.66 0.814386
Target:  5'- cGACGCCGuCGUGcUGCUcggcuccacccGCGGGCCg- -3'
miRNA:   3'- -CUGUGGUuGCACaGCGA-----------CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 139350 0.66 0.814386
Target:  5'- aGGCGgaGGCG-GUCGC-GUGGGCCCGg -3'
miRNA:   3'- -CUGUggUUGCaCAGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 20959 0.66 0.814386
Target:  5'- uGCAUCGcCGUGgggaCGCgcagGCAGGCCUc -3'
miRNA:   3'- cUGUGGUuGCACa---GCGa---CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 74563 0.66 0.814386
Target:  5'- cGCGCCAccACGUccUCGCggagGCGGGCCa- -3'
miRNA:   3'- cUGUGGU--UGCAc-AGCGa---CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 32059 0.66 0.814386
Target:  5'- -cCGCCucgGCGUcGUCGCgggGCccgugGGGCCCGg -3'
miRNA:   3'- cuGUGGu--UGCA-CAGCGa--CG-----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 79851 0.67 0.805636
Target:  5'- gGugACCAGgGUGUacgacaGCgGCcgccGGGCCCAg -3'
miRNA:   3'- -CugUGGUUgCACAg-----CGaCG----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 13671 0.67 0.805636
Target:  5'- --aGCCGACGacggCGUUaGCGGGCCCGc -3'
miRNA:   3'- cugUGGUUGCaca-GCGA-CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 84683 0.67 0.805636
Target:  5'- cGCGCCGuccuCGc--CGCUGCAGcGCCCGc -3'
miRNA:   3'- cUGUGGUu---GCacaGCGACGUC-CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 107095 0.67 0.805636
Target:  5'- -uCGCCGACGgggGUCGUguuggUGCGGGUgCGg -3'
miRNA:   3'- cuGUGGUUGCa--CAGCG-----ACGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 97388 0.67 0.805636
Target:  5'- -uCGCgGGCGUGggCGC-GCGGGCCUc -3'
miRNA:   3'- cuGUGgUUGCACa-GCGaCGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 4371 0.67 0.79673
Target:  5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3'
miRNA:   3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 127513 0.67 0.79673
Target:  5'- -cCGCCGGCG-GUCGCUcgGGGCgCCGa -3'
miRNA:   3'- cuGUGGUUGCaCAGCGAcgUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 59157 0.67 0.79673
Target:  5'- uGGCGCCGuccgACGgg-CGCagGCAGGCCUu -3'
miRNA:   3'- -CUGUGGU----UGCacaGCGa-CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 129879 0.67 0.79673
Target:  5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3'
miRNA:   3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.