miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 19579 0.68 0.7405
Target:  5'- cGCACUGGgGUGUguccuggaucgcCGCcagGCGGGCCCAc -3'
miRNA:   3'- cUGUGGUUgCACA------------GCGa--CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 20302 0.68 0.75016
Target:  5'- cGCGCCGGCGcagCGCgcgcGCAGGCaCCGc -3'
miRNA:   3'- cUGUGGUUGCacaGCGa---CGUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 20868 0.66 0.839617
Target:  5'- gGGCgACCAccuCGaUGUCGCccGcCGGGCCCAc -3'
miRNA:   3'- -CUG-UGGUu--GC-ACAGCGa-C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 20959 0.66 0.814386
Target:  5'- uGCAUCGcCGUGgggaCGCgcagGCAGGCCUc -3'
miRNA:   3'- cUGUGGUuGCACa---GCGa---CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 21412 0.66 0.822971
Target:  5'- cGCGCCGACGcGUCGCaGC--GCCCc -3'
miRNA:   3'- cUGUGGUUGCaCAGCGaCGucCGGGu -5'
21385 5' -57.6 NC_004812.1 + 21963 0.7 0.587286
Target:  5'- cACGCCGugGUGcUCGCgcggggagggggGCAGGgCCAg -3'
miRNA:   3'- cUGUGGUugCAC-AGCGa-----------CGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 23508 0.67 0.778484
Target:  5'- cGCACU-ACGUGcgggUGCUGCugGGGCCCc -3'
miRNA:   3'- cUGUGGuUGCACa---GCGACG--UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 25456 0.66 0.839617
Target:  5'- aGGCAgCCGugGUgGUCGC-GCGGGCaCAc -3'
miRNA:   3'- -CUGU-GGUugCA-CAGCGaCGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 26717 0.66 0.839617
Target:  5'- cACGCaGGCGcGUCGCacgGCGGGCCg- -3'
miRNA:   3'- cUGUGgUUGCaCAGCGa--CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 27350 0.67 0.769161
Target:  5'- cGGCGCCGcCGcGcCGCUGCuggcgcgcGGCCCGc -3'
miRNA:   3'- -CUGUGGUuGCaCaGCGACGu-------CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 27678 0.69 0.680889
Target:  5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 28495 0.75 0.354383
Target:  5'- cGGCGCCAACGUG-CGCUaccGCgcgcgcacgcgccucGGGCCCGa -3'
miRNA:   3'- -CUGUGGUUGCACaGCGA---CG---------------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 28873 0.68 0.720909
Target:  5'- cGCGCCGcGCGUG-CGCUgggccGCGGGCCgCGg -3'
miRNA:   3'- cUGUGGU-UGCACaGCGA-----CGUCCGG-GU- -5'
21385 5' -57.6 NC_004812.1 + 29643 0.69 0.640228
Target:  5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3'
miRNA:   3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 29766 0.66 0.822971
Target:  5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3'
miRNA:   3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 31623 0.68 0.75016
Target:  5'- cGGCGCCGGCGcgGUCGCcgGCGGGg--- -3'
miRNA:   3'- -CUGUGGUUGCa-CAGCGa-CGUCCgggu -5'
21385 5' -57.6 NC_004812.1 + 32005 0.68 0.7405
Target:  5'- uGC-CCGGCGgcccggGUCGCUucGCcgGGGCCCAu -3'
miRNA:   3'- cUGuGGUUGCa-----CAGCGA--CG--UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 32059 0.66 0.814386
Target:  5'- -cCGCCucgGCGUcGUCGCgggGCccgugGGGCCCGg -3'
miRNA:   3'- cuGUGGu--UGCA-CAGCGa--CG-----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 33672 0.68 0.747273
Target:  5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3'
miRNA:   3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 35681 0.66 0.839617
Target:  5'- uGGCGCC-GCGUG-CGCgGCgccGGGCCUu -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCG---UCCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.