miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 57232 0.66 0.831384
Target:  5'- aGCGCCGACacggCGCUGC-GGCUCGg -3'
miRNA:   3'- cUGUGGUUGcacaGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 87632 0.66 0.847662
Target:  5'- cGGCACCAcuagcCGgaugCGCUGUaucAGGCCCu -3'
miRNA:   3'- -CUGUGGUu----GCaca-GCGACG---UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 17907 0.66 0.822971
Target:  5'- cGCGCCcGCG-GUCGUccggGCgcgAGGCCCGg -3'
miRNA:   3'- cUGUGGuUGCaCAGCGa---CG---UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 119935 0.66 0.845269
Target:  5'- gGGCGCCGaccccgcgcugcugACGcUGUCcCUGUGGGCCUg -3'
miRNA:   3'- -CUGUGGU--------------UGC-ACAGcGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 29766 0.66 0.822971
Target:  5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3'
miRNA:   3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 43668 0.66 0.847662
Target:  5'- -uCACCAGCGacacggCGCUGCgcGGGCCg- -3'
miRNA:   3'- cuGUGGUUGCaca---GCGACG--UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 126674 0.66 0.814386
Target:  5'- cGACGCCGuCGUGcUGCUcggcuccacccGCGGGCCg- -3'
miRNA:   3'- -CUGUGGUuGCACaGCGA-----------CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 150836 0.66 0.845269
Target:  5'- gGGCGCCGaccccgcgcugcugACGcUGUCcCUGUGGGCCUg -3'
miRNA:   3'- -CUGUGGU--------------UGC-ACAGcGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 42305 0.66 0.831384
Target:  5'- cGACGCCGAUGUcauuUCGCgcccGCAG-CCCGg -3'
miRNA:   3'- -CUGUGGUUGCAc---AGCGa---CGUCcGGGU- -5'
21385 5' -57.6 NC_004812.1 + 20959 0.66 0.814386
Target:  5'- uGCAUCGcCGUGgggaCGCgcagGCAGGCCUc -3'
miRNA:   3'- cUGUGGUuGCACa---GCGa---CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 146341 0.66 0.850826
Target:  5'- cGCGCCgaaccgugaggGugGUGUugaggagcagcacccCGCcGCGGGCCCAc -3'
miRNA:   3'- cUGUGG-----------UugCACA---------------GCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3480 0.67 0.778484
Target:  5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3'
miRNA:   3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 156158 0.67 0.769161
Target:  5'- cGCGCCGGCGgcccggGcUCGCgGCGGGCgCGc -3'
miRNA:   3'- cUGUGGUUGCa-----C-AGCGaCGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 138712 0.67 0.787677
Target:  5'- gGACgACC-GCGg--CGCgGCGGGCCCGc -3'
miRNA:   3'- -CUG-UGGuUGCacaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 79851 0.67 0.805636
Target:  5'- gGugACCAGgGUGUacgacaGCgGCcgccGGGCCCAg -3'
miRNA:   3'- -CugUGGUUgCACAg-----CGaCG----UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 129879 0.67 0.79673
Target:  5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3'
miRNA:   3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 127513 0.67 0.79673
Target:  5'- -cCGCCGGCG-GUCGCUcgGGGCgCCGa -3'
miRNA:   3'- cuGUGGUUGCaCAGCGAcgUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 128988 0.67 0.778484
Target:  5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3'
miRNA:   3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 112526 0.67 0.778484
Target:  5'- uACGCCAccGCG-GUC-CUGCGGGCgCCc -3'
miRNA:   3'- cUGUGGU--UGCaCAGcGACGUCCG-GGu -5'
21385 5' -57.6 NC_004812.1 + 3441 0.67 0.787677
Target:  5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3'
miRNA:   3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.