miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 136632 0.72 0.513639
Target:  5'- --uGCCGAgGUGUCgaucgccucgacggaGCUGCAGGCCUu -3'
miRNA:   3'- cugUGGUUgCACAG---------------CGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 100397 0.72 0.519486
Target:  5'- cGAgGCCGACGcccUGCUGgAGGCCCAc -3'
miRNA:   3'- -CUgUGGUUGCacaGCGACgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138832 0.71 0.529288
Target:  5'- gGACGCCGcuGCGUGUCcCcGCAGGaCCCc -3'
miRNA:   3'- -CUGUGGU--UGCACAGcGaCGUCC-GGGu -5'
21385 5' -57.6 NC_004812.1 + 138279 0.71 0.539157
Target:  5'- cGCGCCGcgcccugcggGCGgugGUCGCgGCGGGCUCGg -3'
miRNA:   3'- cUGUGGU----------UGCa--CAGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 9473 0.71 0.549088
Target:  5'- cACGCCGcgACGUGcUCGUgcGCAGGCCUg -3'
miRNA:   3'- cUGUGGU--UGCAC-AGCGa-CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 21963 0.7 0.587286
Target:  5'- cACGCCGugGUGcUCGCgcggggagggggGCAGGgCCAg -3'
miRNA:   3'- cUGUGGUugCAC-AGCGa-----------CGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 47131 0.7 0.589312
Target:  5'- uGGCGCUgcugAACaaGUCGCUGCAGGgCCGc -3'
miRNA:   3'- -CUGUGG----UUGcaCAGCGACGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 82263 0.7 0.609636
Target:  5'- -cCACCAGCGcG-CGCcGCAGGCUCGc -3'
miRNA:   3'- cuGUGGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 2792 0.7 0.609636
Target:  5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3'
miRNA:   3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 128300 0.7 0.609636
Target:  5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3'
miRNA:   3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 39102 0.7 0.609636
Target:  5'- -cCACCGACGgccgcGUCGCggugGuCAGGUCCAc -3'
miRNA:   3'- cuGUGGUUGCa----CAGCGa---C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138459 0.7 0.619827
Target:  5'- cGACGgCGGCGUuUCGCgGCGgGGCCCu -3'
miRNA:   3'- -CUGUgGUUGCAcAGCGaCGU-CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 37510 0.7 0.619827
Target:  5'- cGCGCCuGCGUGUUGUggaGCAGGCggCCGu -3'
miRNA:   3'- cUGUGGuUGCACAGCGa--CGUCCG--GGU- -5'
21385 5' -57.6 NC_004812.1 + 138045 0.7 0.619827
Target:  5'- cGGCGgCGGCGg--CGgaGCGGGCCCGc -3'
miRNA:   3'- -CUGUgGUUGCacaGCgaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 72829 0.7 0.619827
Target:  5'- -cCACCGACGggccgcugcaGUCGCUGUGGGCgCGc -3'
miRNA:   3'- cuGUGGUUGCa---------CAGCGACGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 128705 0.7 0.630027
Target:  5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3'
miRNA:   3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3196 0.7 0.630027
Target:  5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3'
miRNA:   3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 78314 0.7 0.630027
Target:  5'- cGCcCCGGCGUG-CG-UGCGGGCCCc -3'
miRNA:   3'- cUGuGGUUGCACaGCgACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 80042 0.69 0.640228
Target:  5'- aGCACaugcGCGggggGUCGCUGCcggccgAGGCCCGc -3'
miRNA:   3'- cUGUGgu--UGCa---CAGCGACG------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 155151 0.69 0.640228
Target:  5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3'
miRNA:   3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.