miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 135478 1.09 0.001992
Target:  5'- cGACACCAACGUGUCGCUGCAGGCCCAg -3'
miRNA:   3'- -CUGUGGUUGCACAGCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 83069 0.81 0.159101
Target:  5'- --uGCCcGCG-GUCGCUGCGGGCCCGc -3'
miRNA:   3'- cugUGGuUGCaCAGCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 86480 0.77 0.273089
Target:  5'- uGCGCCAugGUcGUugacggagcCGCUGCGGGCCCc -3'
miRNA:   3'- cUGUGGUugCA-CA---------GCGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 128915 0.77 0.27958
Target:  5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3'
miRNA:   3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 3407 0.77 0.27958
Target:  5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3'
miRNA:   3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 116396 0.76 0.313874
Target:  5'- aGGCGCgGGCG-GUCGCcgauccgcUGCGGGCCCGc -3'
miRNA:   3'- -CUGUGgUUGCaCAGCG--------ACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 133723 0.75 0.328457
Target:  5'- cGCACCucGGCGUGUCGUUgGCGGGgCCAu -3'
miRNA:   3'- cUGUGG--UUGCACAGCGA-CGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 28495 0.75 0.354383
Target:  5'- cGGCGCCAACGUG-CGCUaccGCgcgcgcacgcgccucGGGCCCGa -3'
miRNA:   3'- -CUGUGGUUGCACaGCGA---CG---------------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 154003 0.75 0.354383
Target:  5'- cGGCGCCAACGUG-CGCUaccGCgcgcgcacgcgccucGGGCCCGa -3'
miRNA:   3'- -CUGUGGUUGCACaGCGA---CG---------------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 2204 0.75 0.359105
Target:  5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3'
miRNA:   3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 127713 0.75 0.359105
Target:  5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3'
miRNA:   3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 7630 0.74 0.391697
Target:  5'- aGACGCgCGGCGgccgggGUCggggcgcgaaGCUGCGGGCCCGc -3'
miRNA:   3'- -CUGUG-GUUGCa-----CAG----------CGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 38531 0.74 0.391697
Target:  5'- aGACGCgCGGCGgccgggGUCggggcgcgaaGCUGCGGGCCCGc -3'
miRNA:   3'- -CUGUG-GUUGCa-----CAG----------CGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 136778 0.73 0.417372
Target:  5'- cGCGCUGuacGCGUGcgCGCUGguGGCCCu -3'
miRNA:   3'- cUGUGGU---UGCACa-GCGACguCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 63341 0.73 0.417372
Target:  5'- aGCGCCAGCGagaacGUcCGCUGCAGGUUCGc -3'
miRNA:   3'- cUGUGGUUGCa----CA-GCGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 129406 0.73 0.462354
Target:  5'- gGACGCUGACGccgcGUCGCUGCggcGGGCCg- -3'
miRNA:   3'- -CUGUGGUUGCa---CAGCGACG---UCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 70116 0.72 0.471655
Target:  5'- aGGCGCCgGGCGcGUgGCUGC-GGCCCGc -3'
miRNA:   3'- -CUGUGG-UUGCaCAgCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 82887 0.72 0.490534
Target:  5'- cGACGUCAugGUGgCGCUGguGGCCg- -3'
miRNA:   3'- -CUGUGGUugCACaGCGACguCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 49732 0.72 0.500104
Target:  5'- gGACgGCCGACGgggucgggGUCGCgGCggGGGCCCGg -3'
miRNA:   3'- -CUG-UGGUUGCa-------CAGCGaCG--UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 91190 0.72 0.500104
Target:  5'- -uCGCCuGCGUGUUGUuggggUGCAGGUCCGu -3'
miRNA:   3'- cuGUGGuUGCACAGCG-----ACGUCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.