Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21385 | 5' | -57.6 | NC_004812.1 | + | 109315 | 0.66 | 0.831384 |
Target: 5'- cGCGCCGGCGg--CGCUGgAGGCg-- -3' miRNA: 3'- cUGUGGUUGCacaGCGACgUCCGggu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 155274 | 0.66 | 0.822971 |
Target: 5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3' miRNA: 3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 20959 | 0.66 | 0.814386 |
Target: 5'- uGCAUCGcCGUGgggaCGCgcagGCAGGCCUc -3' miRNA: 3'- cUGUGGUuGCACa---GCGa---CGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 25456 | 0.66 | 0.839617 |
Target: 5'- aGGCAgCCGugGUgGUCGC-GCGGGCaCAc -3' miRNA: 3'- -CUGU-GGUugCA-CAGCGaCGUCCGgGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 80840 | 0.66 | 0.831384 |
Target: 5'- gGGCACCGugGUGgUGCcgaGC-GGCCCc -3' miRNA: 3'- -CUGUGGUugCACaGCGa--CGuCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 139350 | 0.66 | 0.814386 |
Target: 5'- aGGCGgaGGCG-GUCGC-GUGGGCCCGg -3' miRNA: 3'- -CUGUggUUGCaCAGCGaCGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 65764 | 0.66 | 0.822971 |
Target: 5'- cGGCGCCGGCuuccgCGCcGCGGGCgCCGg -3' miRNA: 3'- -CUGUGGUUGcaca-GCGaCGUCCG-GGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 26717 | 0.66 | 0.839617 |
Target: 5'- cACGCaGGCGcGUCGCacgGCGGGCCg- -3' miRNA: 3'- cUGUGgUUGCaCAGCGa--CGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 35681 | 0.66 | 0.839617 |
Target: 5'- uGGCGCC-GCGUG-CGCgGCgccGGGCCUu -3' miRNA: 3'- -CUGUGGuUGCACaGCGaCG---UCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 21412 | 0.66 | 0.822971 |
Target: 5'- cGCGCCGACGcGUCGCaGC--GCCCc -3' miRNA: 3'- cUGUGGUUGCaCAGCGaCGucCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 29766 | 0.66 | 0.822971 |
Target: 5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3' miRNA: 3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 20868 | 0.66 | 0.839617 |
Target: 5'- gGGCgACCAccuCGaUGUCGCccGcCGGGCCCAc -3' miRNA: 3'- -CUG-UGGUu--GC-ACAGCGa-C-GUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 142211 | 0.66 | 0.831384 |
Target: 5'- -cCGCCGGCGUcGUCG-UGCuGGCCg- -3' miRNA: 3'- cuGUGGUUGCA-CAGCgACGuCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 18543 | 0.66 | 0.847662 |
Target: 5'- cGCGCUcGCGgccagCGCggcGCGGGCCCGc -3' miRNA: 3'- cUGUGGuUGCaca--GCGa--CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 79352 | 0.66 | 0.831384 |
Target: 5'- aGCGCCAGCGgcgccccCGCgaggGCAGcGCCCc -3' miRNA: 3'- cUGUGGUUGCaca----GCGa---CGUC-CGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 119935 | 0.66 | 0.845269 |
Target: 5'- gGGCGCCGaccccgcgcugcugACGcUGUCcCUGUGGGCCUg -3' miRNA: 3'- -CUGUGGU--------------UGC-ACAGcGACGUCCGGGu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 32059 | 0.66 | 0.814386 |
Target: 5'- -cCGCCucgGCGUcGUCGCgggGCccgugGGGCCCGg -3' miRNA: 3'- cuGUGGu--UGCA-CAGCGa--CG-----UCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 78227 | 0.66 | 0.837166 |
Target: 5'- cGACGCCAgaaagucgcccaccGCGguccuUCGCgggaGCAGGCUCAc -3' miRNA: 3'- -CUGUGGU--------------UGCac---AGCGa---CGUCCGGGU- -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 74563 | 0.66 | 0.814386 |
Target: 5'- cGCGCCAccACGUccUCGCggagGCGGGCCa- -3' miRNA: 3'- cUGUGGU--UGCAc-AGCGa---CGUCCGGgu -5' |
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21385 | 5' | -57.6 | NC_004812.1 | + | 146341 | 0.66 | 0.850826 |
Target: 5'- cGCGCCgaaccgugaggGugGUGUugaggagcagcacccCGCcGCGGGCCCAc -3' miRNA: 3'- cUGUGG-----------UugCACA---------------GCGaCGUCCGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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