miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 138986 0.69 0.670762
Target:  5'- cGGCACCGACGg--CGgaGCgguucgcccGGGCCCGc -3'
miRNA:   3'- -CUGUGGUUGCacaGCgaCG---------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 39102 0.7 0.609636
Target:  5'- -cCACCGACGgccgcGUCGCggugGuCAGGUCCAc -3'
miRNA:   3'- cuGUGGUUGCa----CAGCGa---C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 37510 0.7 0.619827
Target:  5'- cGCGCCuGCGUGUUGUggaGCAGGCggCCGu -3'
miRNA:   3'- cUGUGGuUGCACAGCGa--CGUCCG--GGU- -5'
21385 5' -57.6 NC_004812.1 + 128705 0.7 0.630027
Target:  5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3'
miRNA:   3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 78314 0.7 0.630027
Target:  5'- cGCcCCGGCGUG-CG-UGCGGGCCCc -3'
miRNA:   3'- cUGuGGUUGCACaGCgACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 80042 0.69 0.640228
Target:  5'- aGCACaugcGCGggggGUCGCUGCcggccgAGGCCCGc -3'
miRNA:   3'- cUGUGgu--UGCa---CAGCGACG------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 155151 0.69 0.640228
Target:  5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3'
miRNA:   3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 83504 0.69 0.650424
Target:  5'- cGACgGCCAgGCG-GUgCGCgaGCAGGCCCGg -3'
miRNA:   3'- -CUG-UGGU-UGCaCA-GCGa-CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 129366 0.69 0.670762
Target:  5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3'
miRNA:   3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 128300 0.7 0.609636
Target:  5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3'
miRNA:   3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 82263 0.7 0.609636
Target:  5'- -cCACCAGCGcG-CGCcGCAGGCUCGc -3'
miRNA:   3'- cuGUGGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 47131 0.7 0.589312
Target:  5'- uGGCGCUgcugAACaaGUCGCUGCAGGgCCGc -3'
miRNA:   3'- -CUGUGG----UUGcaCAGCGACGUCCgGGU- -5'
21385 5' -57.6 NC_004812.1 + 128915 0.77 0.27958
Target:  5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3'
miRNA:   3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 154003 0.75 0.354383
Target:  5'- cGGCGCCAACGUG-CGCUaccGCgcgcgcacgcgccucGGGCCCGa -3'
miRNA:   3'- -CUGUGGUUGCACaGCGA---CG---------------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 127713 0.75 0.359105
Target:  5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3'
miRNA:   3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 7630 0.74 0.391697
Target:  5'- aGACGCgCGGCGgccgggGUCggggcgcgaaGCUGCGGGCCCGc -3'
miRNA:   3'- -CUGUG-GUUGCa-----CAG----------CGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 70116 0.72 0.471655
Target:  5'- aGGCGCCgGGCGcGUgGCUGC-GGCCCGc -3'
miRNA:   3'- -CUGUGG-UUGCaCAgCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 91190 0.72 0.500104
Target:  5'- -uCGCCuGCGUGUUGUuggggUGCAGGUCCGu -3'
miRNA:   3'- cuGUGGuUGCACAGCG-----ACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 49732 0.72 0.500104
Target:  5'- gGACgGCCGACGgggucgggGUCGCgGCggGGGCCCGg -3'
miRNA:   3'- -CUG-UGGUUGCa-------CAGCGaCG--UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138832 0.71 0.529288
Target:  5'- gGACGCCGcuGCGUGUCcCcGCAGGaCCCc -3'
miRNA:   3'- -CUGUGGU--UGCACAGcGaCGUCC-GGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.