miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 722 0.68 0.75016
Target:  5'- cGGCGCCGGCGcgGUCGCcgGCGGGg--- -3'
miRNA:   3'- -CUGUGGUUGCa-CAGCGa-CGUCCgggu -5'
21385 5' -57.6 NC_004812.1 + 1104 0.68 0.7405
Target:  5'- uGC-CCGGCGgcccggGUCGCUucGCcgGGGCCCAu -3'
miRNA:   3'- cUGuGGUUGCa-----CAGCGA--CG--UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 1784 0.68 0.701014
Target:  5'- cGCGCCGACGggagCGCgUGCaucGGGCCCc -3'
miRNA:   3'- cUGUGGUUGCaca-GCG-ACG---UCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 2004 0.67 0.79673
Target:  5'- -cCGCCGGCG-GUCGCUcgGGGCgCCGa -3'
miRNA:   3'- cuGUGGUUGCaCAGCGAcgUCCG-GGU- -5'
21385 5' -57.6 NC_004812.1 + 2204 0.75 0.359105
Target:  5'- cGGCGagCAGCGUGUCGCcGC-GGCCCGc -3'
miRNA:   3'- -CUGUg-GUUGCACAGCGaCGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 2771 0.68 0.747273
Target:  5'- aACGCCGcCGUGUCcuaucucaucguggGCgUGCAGGCCa- -3'
miRNA:   3'- cUGUGGUuGCACAG--------------CG-ACGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 2792 0.7 0.609636
Target:  5'- cGGCGCagggcagguaGACGUGgcggCGCgcgacgGCGGGCCCGu -3'
miRNA:   3'- -CUGUGg---------UUGCACa---GCGa-----CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3196 0.7 0.630027
Target:  5'- aGGCGgCGGCGcGgCGCaGCGGGCCCGa -3'
miRNA:   3'- -CUGUgGUUGCaCaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3407 0.77 0.27958
Target:  5'- gGGCGCCGGCGUGUgGCU--GGGCCCc -3'
miRNA:   3'- -CUGUGGUUGCACAgCGAcgUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 3441 0.67 0.787677
Target:  5'- cGGCGCCAGCc-GcCGCggggGuCGGGCCCGg -3'
miRNA:   3'- -CUGUGGUUGcaCaGCGa---C-GUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3480 0.67 0.778484
Target:  5'- cGCGCCGucagcGCGgcggGcCGCgggcGCGGGCCCGg -3'
miRNA:   3'- cUGUGGU-----UGCa---CaGCGa---CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 3718 0.67 0.787677
Target:  5'- cGGCGCCGGCGgagCGCaccuggcGCGGGCCg- -3'
miRNA:   3'- -CUGUGGUUGCacaGCGa------CGUCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 3858 0.69 0.670762
Target:  5'- aGCACCAGCGcGUCGCgcgUGC-GGCgCAg -3'
miRNA:   3'- cUGUGGUUGCaCAGCG---ACGuCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 4371 0.67 0.79673
Target:  5'- cGGCGgCGGCGUG-CGC--CAGGCCCc -3'
miRNA:   3'- -CUGUgGUUGCACaGCGacGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 4914 0.68 0.730747
Target:  5'- cGCGCCGcCGc-UCGCUGC-GGCCCGc -3'
miRNA:   3'- cUGUGGUuGCacAGCGACGuCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 7630 0.74 0.391697
Target:  5'- aGACGCgCGGCGgccgggGUCggggcgcgaaGCUGCGGGCCCGc -3'
miRNA:   3'- -CUGUG-GUUGCa-----CAG----------CGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 9473 0.71 0.549088
Target:  5'- cACGCCGcgACGUGcUCGUgcGCAGGCCUg -3'
miRNA:   3'- cUGUGGU--UGCAC-AGCGa-CGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 13671 0.67 0.805636
Target:  5'- --aGCCGACGacggCGUUaGCGGGCCCGc -3'
miRNA:   3'- cugUGGUUGCaca-GCGA-CGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 17907 0.66 0.822971
Target:  5'- cGCGCCcGCG-GUCGUccggGCgcgAGGCCCGg -3'
miRNA:   3'- cUGUGGuUGCaCAGCGa---CG---UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 18543 0.66 0.847662
Target:  5'- cGCGCUcGCGgccagCGCggcGCGGGCCCGc -3'
miRNA:   3'- cUGUGGuUGCaca--GCGa--CGUCCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.