miRNA display CGI


Results 1 - 20 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21385 5' -57.6 NC_004812.1 + 156158 0.67 0.769161
Target:  5'- cGCGCCGGCGgcccggGcUCGCgGCGGGCgCGc -3'
miRNA:   3'- cUGUGGUUGCa-----C-AGCGaCGUCCGgGU- -5'
21385 5' -57.6 NC_004812.1 + 155274 0.66 0.822971
Target:  5'- gGACGCCAaaccggggagggGCGgggCGCgGCGGGgCCCGg -3'
miRNA:   3'- -CUGUGGU------------UGCacaGCGaCGUCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 155151 0.69 0.640228
Target:  5'- gGACGCCGGCGUcGcCGCcgUGCccGGCCCu -3'
miRNA:   3'- -CUGUGGUUGCA-CaGCG--ACGu-CCGGGu -5'
21385 5' -57.6 NC_004812.1 + 154381 0.68 0.720909
Target:  5'- cGCGCCGcGCGUG-CGCUgggccGCGGGCCgCGg -3'
miRNA:   3'- cUGUGGU-UGCACaGCGA-----CGUCCGG-GU- -5'
21385 5' -57.6 NC_004812.1 + 154003 0.75 0.354383
Target:  5'- cGGCGCCAACGUG-CGCUaccGCgcgcgcacgcgccucGGGCCCGa -3'
miRNA:   3'- -CUGUGGUUGCACaGCGA---CG---------------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 153186 0.69 0.680889
Target:  5'- uGGCGCC-GCGUGcCGCcG-GGGCCCAg -3'
miRNA:   3'- -CUGUGGuUGCACaGCGaCgUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 152858 0.67 0.769161
Target:  5'- cGGCGCCGcCGcGcCGCUGCuggcgcgcGGCCCGc -3'
miRNA:   3'- -CUGUGGUuGCaCaGCGACGu-------CCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 150836 0.66 0.845269
Target:  5'- gGGCGCCGaccccgcgcugcugACGcUGUCcCUGUGGGCCUg -3'
miRNA:   3'- -CUGUGGU--------------UGC-ACAGcGACGUCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 146341 0.66 0.850826
Target:  5'- cGCGCCgaaccgugaggGugGUGUugaggagcagcacccCGCcGCGGGCCCAc -3'
miRNA:   3'- cUGUGG-----------UugCACA---------------GCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 144801 0.68 0.701014
Target:  5'- cACACCGACGUGUCcGUcaUGCcgaucGCCCAc -3'
miRNA:   3'- cUGUGGUUGCACAG-CG--ACGuc---CGGGU- -5'
21385 5' -57.6 NC_004812.1 + 142914 0.67 0.787677
Target:  5'- -cCGCCAGCcccUC-CUGCGGGCCCGc -3'
miRNA:   3'- cuGUGGUUGcacAGcGACGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 142585 0.67 0.79673
Target:  5'- uGACgGCCGugGUGUacUGCUGguGGaugaCCAa -3'
miRNA:   3'- -CUG-UGGUugCACA--GCGACguCCg---GGU- -5'
21385 5' -57.6 NC_004812.1 + 142211 0.66 0.831384
Target:  5'- -cCGCCGGCGUcGUCG-UGCuGGCCg- -3'
miRNA:   3'- cuGUGGUUGCA-CAGCgACGuCCGGgu -5'
21385 5' -57.6 NC_004812.1 + 141542 0.69 0.650424
Target:  5'- gGGCGgCGACGUGUCGCcGCcaguccgccuccAGGuCCCGg -3'
miRNA:   3'- -CUGUgGUUGCACAGCGaCG------------UCC-GGGU- -5'
21385 5' -57.6 NC_004812.1 + 139422 0.68 0.710994
Target:  5'- cGACACCGggGCG-GcCGgUGCuGGCCCu -3'
miRNA:   3'- -CUGUGGU--UGCaCaGCgACGuCCGGGu -5'
21385 5' -57.6 NC_004812.1 + 139350 0.66 0.814386
Target:  5'- aGGCGgaGGCG-GUCGC-GUGGGCCCGg -3'
miRNA:   3'- -CUGUggUUGCaCAGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138986 0.69 0.670762
Target:  5'- cGGCACCGACGg--CGgaGCgguucgcccGGGCCCGc -3'
miRNA:   3'- -CUGUGGUUGCacaGCgaCG---------UCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138832 0.71 0.529288
Target:  5'- gGACGCCGcuGCGUGUCcCcGCAGGaCCCc -3'
miRNA:   3'- -CUGUGGU--UGCACAGcGaCGUCC-GGGu -5'
21385 5' -57.6 NC_004812.1 + 138712 0.67 0.787677
Target:  5'- gGACgACC-GCGg--CGCgGCGGGCCCGc -3'
miRNA:   3'- -CUG-UGGuUGCacaGCGaCGUCCGGGU- -5'
21385 5' -57.6 NC_004812.1 + 138459 0.7 0.619827
Target:  5'- cGACGgCGGCGUuUCGCgGCGgGGCCCu -3'
miRNA:   3'- -CUGUgGUUGCAcAGCGaCGU-CCGGGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.