miRNA display CGI


Results 41 - 60 of 729 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 4360 0.66 0.766545
Target:  5'- gGGCGCGcGuGCaacauggCGCGCGccCUGgccgaggcguCGCCCg -3'
miRNA:   3'- -CCGCGC-CuCGa------GCGCGCa-GAU----------GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 30177 0.66 0.766545
Target:  5'- cGCGCGGcgGGCUCgGCGCGcgCgaggGCGUg- -3'
miRNA:   3'- cCGCGCC--UCGAG-CGCGCa-Ga---UGCGgg -5'
21386 3' -60.6 NC_004812.1 + 36343 0.66 0.766545
Target:  5'- aGGgGCGGAagagGaCUCGCGCc----CGCCCa -3'
miRNA:   3'- -CCgCGCCU----C-GAGCGCGcagauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 5442 0.66 0.766545
Target:  5'- aGGgGCGGAagagGaCUCGCGCc----CGCCCa -3'
miRNA:   3'- -CCgCGCCU----C-GAGCGCGcagauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 155894 0.66 0.766545
Target:  5'- aGGgGCGGGGCcggCGCcCGggCUgccGCGCCg -3'
miRNA:   3'- -CCgCGCCUCGa--GCGcGCa-GA---UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 110978 0.66 0.766545
Target:  5'- cGcCGCGG-GCagCGCGgcCGUCcccGCGCCCa -3'
miRNA:   3'- cC-GCGCCuCGa-GCGC--GCAGa--UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 94243 0.66 0.766545
Target:  5'- cGGCcUGGGGUUCGCGCcgacCcACGCgCCg -3'
miRNA:   3'- -CCGcGCCUCGAGCGCGca--GaUGCG-GG- -5'
21386 3' -60.6 NC_004812.1 + 21185 0.66 0.766545
Target:  5'- gGGCGCGGAGg----GCGUCcaggUGCGCgCCg -3'
miRNA:   3'- -CCGCGCCUCgagcgCGCAG----AUGCG-GG- -5'
21386 3' -60.6 NC_004812.1 + 100404 0.66 0.766545
Target:  5'- cGGC-CGGAGgUCGaUGCGcCgcgaggcCGCCCg -3'
miRNA:   3'- -CCGcGCCUCgAGC-GCGCaGau-----GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 77456 0.66 0.766545
Target:  5'- cGGcCGgGGGGCUCGUggcgagcggagGCGgggCUGgGaCCCg -3'
miRNA:   3'- -CC-GCgCCUCGAGCG-----------CGCa--GAUgC-GGG- -5'
21386 3' -60.6 NC_004812.1 + 20006 0.66 0.766545
Target:  5'- cGCGCGGcGCcgucuccgCGCGCGUC-GCGgCa -3'
miRNA:   3'- cCGCGCCuCGa-------GCGCGCAGaUGCgGg -5'
21386 3' -60.6 NC_004812.1 + 71911 0.66 0.766545
Target:  5'- cGGCGCGGcGCcgCGgGCG-CUGCaGCg- -3'
miRNA:   3'- -CCGCGCCuCGa-GCgCGCaGAUG-CGgg -5'
21386 3' -60.6 NC_004812.1 + 128711 0.66 0.766545
Target:  5'- cGGCGCGGcgcAGCgggcccgaggCGCGCG---GCGgCCg -3'
miRNA:   3'- -CCGCGCC---UCGa---------GCGCGCagaUGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 32663 0.66 0.766545
Target:  5'- cGgGCuGGGCUCGCGCGggaggAgGCCg -3'
miRNA:   3'- cCgCGcCUCGAGCGCGCaga--UgCGGg -5'
21386 3' -60.6 NC_004812.1 + 35261 0.66 0.766545
Target:  5'- gGGCGCGcGuGCaacauggCGCGCGccCUGgccgaggcguCGCCCg -3'
miRNA:   3'- -CCGCGC-CuCGa------GCGCGCa-GAU----------GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 130150 0.66 0.766545
Target:  5'- gGGCGCGG-GCgCGCcgGCGgccUCguaGCGCCg -3'
miRNA:   3'- -CCGCGCCuCGaGCG--CGC---AGa--UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 23799 0.66 0.766545
Target:  5'- uGCGCGGcuccauGCgcgcCGCGCGgggCgGCGaCCCg -3'
miRNA:   3'- cCGCGCCu-----CGa---GCGCGCa--GaUGC-GGG- -5'
21386 3' -60.6 NC_004812.1 + 15515 0.66 0.766545
Target:  5'- cGCGgGGAGUggcgCGUGCGUg-AC-CCCg -3'
miRNA:   3'- cCGCgCCUCGa---GCGCGCAgaUGcGGG- -5'
21386 3' -60.6 NC_004812.1 + 55760 0.66 0.766545
Target:  5'- -cCGCGGccccgucCUCGCccuccccgGCGUCgcgGCGCCCg -3'
miRNA:   3'- ccGCGCCuc-----GAGCG--------CGCAGa--UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 51497 0.66 0.765641
Target:  5'- uGCGCGGucgcuuuGGC-CGCGCaggGUCc-CGCCCc -3'
miRNA:   3'- cCGCGCC-------UCGaGCGCG---CAGauGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.