miRNA display CGI


Results 21 - 40 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 11936 0.66 0.775523
Target:  5'- cGGgGCGGGGgUgGCGgGUUccuccguccCGCCCu -3'
miRNA:   3'- -CCgCGCCUCgAgCGCgCAGau-------GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 16505 0.66 0.775523
Target:  5'- cGGC-CGGGGggCGCGgGggcgaUGCGCUCa -3'
miRNA:   3'- -CCGcGCCUCgaGCGCgCag---AUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 67300 0.66 0.775523
Target:  5'- gGGgGCGGgagcgGGCUCggggaggcgaGCGCGg--GCGCUCa -3'
miRNA:   3'- -CCgCGCC-----UCGAG----------CGCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 50131 0.66 0.775523
Target:  5'- -uCGCGGGGCUCauCGCGU--GCGCgCa -3'
miRNA:   3'- ccGCGCCUCGAGc-GCGCAgaUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 153994 0.66 0.775523
Target:  5'- cGGgGCGGGGC-CgGCGCGgaga-GUCCg -3'
miRNA:   3'- -CCgCGCCUCGaG-CGCGCagaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 141796 0.66 0.775523
Target:  5'- gGGgGCGG-GC-CGCGCGggggUgcCGCUCg -3'
miRNA:   3'- -CCgCGCCuCGaGCGCGCa---GauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 7914 0.66 0.775523
Target:  5'- aGGUGUcgGGGGCUgcggCGCGCGcCggcGCGgCCg -3'
miRNA:   3'- -CCGCG--CCUCGA----GCGCGCaGa--UGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 17100 0.66 0.775523
Target:  5'- -cCG-GGGGUUCGCGUucgccgucGUCUugGCCa -3'
miRNA:   3'- ccGCgCCUCGAGCGCG--------CAGAugCGGg -5'
21386 3' -60.6 NC_004812.1 + 6172 0.66 0.775523
Target:  5'- gGGCgGCGGGGgUUGgguCGCGgaggCccgggGCGCCCg -3'
miRNA:   3'- -CCG-CGCCUCgAGC---GCGCa---Ga----UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 38815 0.66 0.775523
Target:  5'- aGGUGUcgGGGGCUgcggCGCGCGcCggcGCGgCCg -3'
miRNA:   3'- -CCGCG--CCUCGA----GCGCGCaGa--UGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 122704 0.66 0.775523
Target:  5'- cGGCGUGGAgGCggGCGgCGaUCgcgACGgCCg -3'
miRNA:   3'- -CCGCGCCU-CGagCGC-GC-AGa--UGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 45822 0.66 0.77463
Target:  5'- aGCGCGaacgccuccaccGuGUcccccacccccagUCGCGCGUCguaACGCCCc -3'
miRNA:   3'- cCGCGC------------CuCG-------------AGCGCGCAGa--UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 48763 0.66 0.77463
Target:  5'- cGGagGCGGAGCcccgccucCGCGaggcccucaccguCGUCaACGCCCu -3'
miRNA:   3'- -CCg-CGCCUCGa-------GCGC-------------GCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 36206 0.66 0.772842
Target:  5'- aGCGCGGccGCgUCGCccucgcggucgcccGCGUacGCGCCCc -3'
miRNA:   3'- cCGCGCCu-CG-AGCG--------------CGCAgaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 77120 0.66 0.767448
Target:  5'- uGGCcugGUGGAGCgcguccucggccaggCGcCGCGUCUcggccgGCaGCCCg -3'
miRNA:   3'- -CCG---CGCCUCGa--------------GC-GCGCAGA------UG-CGGG- -5'
21386 3' -60.6 NC_004812.1 + 32663 0.66 0.766545
Target:  5'- cGgGCuGGGCUCGCGCGggaggAgGCCg -3'
miRNA:   3'- cCgCGcCUCGAGCGCGCaga--UgCGGg -5'
21386 3' -60.6 NC_004812.1 + 87741 0.66 0.766545
Target:  5'- gGGCGcCGGGGC-CGCggaccgacgcggGCGaggUCUACcCCCg -3'
miRNA:   3'- -CCGC-GCCUCGaGCG------------CGC---AGAUGcGGG- -5'
21386 3' -60.6 NC_004812.1 + 71911 0.66 0.766545
Target:  5'- cGGCGCGGcGCcgCGgGCG-CUGCaGCg- -3'
miRNA:   3'- -CCGCGCCuCGa-GCgCGCaGAUG-CGgg -5'
21386 3' -60.6 NC_004812.1 + 30386 0.66 0.766545
Target:  5'- aGGgGCGGGGCcggCGCcCGggCUgccGCGCCg -3'
miRNA:   3'- -CCgCGCCUCGa--GCGcGCa-GA---UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 21185 0.66 0.766545
Target:  5'- gGGCGCGGAGg----GCGUCcaggUGCGCgCCg -3'
miRNA:   3'- -CCGCGCCUCgagcgCGCAG----AUGCG-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.