miRNA display CGI


Results 21 - 40 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 3051 0.66 0.742709
Target:  5'- aGCGCGGcgagcaggaaggagaGGCcgccgCGCGCGUCg--GUCCa -3'
miRNA:   3'- cCGCGCC---------------UCGa----GCGCGCAGaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 3241 0.71 0.471518
Target:  5'- aGGCGCGGccggagccgGGCUCGgGCGggccgCaGCGCgCg -3'
miRNA:   3'- -CCGCGCC---------UCGAGCgCGCa----GaUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 3243 0.67 0.710659
Target:  5'- cGGCGCccgccaGGGGCgccCGCGCcccCgcCGCCCg -3'
miRNA:   3'- -CCGCG------CCUCGa--GCGCGca-GauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 3397 0.69 0.545697
Target:  5'- cGGCgGCGGAGggCGCcgGCGUguggCUGgGCCCc -3'
miRNA:   3'- -CCG-CGCCUCgaGCG--CGCA----GAUgCGGG- -5'
21386 3' -60.6 NC_004812.1 + 3531 0.66 0.719225
Target:  5'- gGGgGCGGGGC-CGCGgCGccgggccggcucuUCUugcGCGCCg -3'
miRNA:   3'- -CCgCGCCUCGaGCGC-GC-------------AGA---UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 3608 0.73 0.378708
Target:  5'- cGGCGaGGAGCUCuuGCGcUUGCGCgCCg -3'
miRNA:   3'- -CCGCgCCUCGAGcgCGCaGAUGCG-GG- -5'
21386 3' -60.6 NC_004812.1 + 3642 0.75 0.28595
Target:  5'- cGCGCGGcGC-CGCccGCGUCUGCGUCg -3'
miRNA:   3'- cCGCGCCuCGaGCG--CGCAGAUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 3738 0.7 0.51829
Target:  5'- uGGCGCGG-GC-CGCGCGcCagcagcggcgcggcgGCGCCg -3'
miRNA:   3'- -CCGCGCCuCGaGCGCGCaGa--------------UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 3849 0.66 0.729618
Target:  5'- aGGCGCauGAGCaccaGCGCGUCgcGCGUgCg -3'
miRNA:   3'- -CCGCGc-CUCGag--CGCGCAGa-UGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 3919 0.72 0.411037
Target:  5'- cGGCgGCGGGGC-CGCGCGgcggCggcacgGCGCgCg -3'
miRNA:   3'- -CCG-CGCCUCGaGCGCGCa---Ga-----UGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 4149 0.68 0.642795
Target:  5'- cGGCcgccagGCGGcGCU-GCGCGgCgaugACGCCCg -3'
miRNA:   3'- -CCG------CGCCuCGAgCGCGCaGa---UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 4236 0.67 0.681784
Target:  5'- gGGCgGCGGcGGCggCG-GCGgcgGCGCCCg -3'
miRNA:   3'- -CCG-CGCC-UCGa-GCgCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 4360 0.66 0.766545
Target:  5'- gGGCGCGcGuGCaacauggCGCGCGccCUGgccgaggcguCGCCCg -3'
miRNA:   3'- -CCGCGC-CuCGa------GCGCGCa-GAU----------GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 4433 0.7 0.498789
Target:  5'- aGGCGgcccCGG-GC-CGCGUGUCccCGCCCg -3'
miRNA:   3'- -CCGC----GCCuCGaGCGCGCAGauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 4586 0.69 0.564868
Target:  5'- aGGCGCGugaugaGGGCguacugccgCGcCGCGUCgcccagcucggGCGCCCa -3'
miRNA:   3'- -CCGCGC------CUCGa--------GC-GCGCAGa----------UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 4642 0.66 0.766545
Target:  5'- gGGCGCGG-GCgCGCcgGCGgccUCguaGCGCCg -3'
miRNA:   3'- -CCGCGCCuCGaGCG--CGC---AGa--UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 4653 0.7 0.489618
Target:  5'- cGCGCGGggaggGGCUCGCcggcCGUCgcGCGCCg -3'
miRNA:   3'- cCGCGCC-----UCGAGCGc---GCAGa-UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 4693 0.71 0.471518
Target:  5'- cGGCGCGccccaGAGCccCGgGCGgCUGuCGCCCa -3'
miRNA:   3'- -CCGCGC-----CUCGa-GCgCGCaGAU-GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 4795 0.66 0.775523
Target:  5'- cGGgGCGaGGGCUgGUGCGg--GCGCg- -3'
miRNA:   3'- -CCgCGC-CUCGAgCGCGCagaUGCGgg -5'
21386 3' -60.6 NC_004812.1 + 4861 0.75 0.267263
Target:  5'- cGGCGCGGccgugaagcGGCcCGUgGCGUC-GCGCCCg -3'
miRNA:   3'- -CCGCGCC---------UCGaGCG-CGCAGaUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.