miRNA display CGI


Results 21 - 40 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 145993 0.66 0.748267
Target:  5'- uGUGCGGGG-UCGCGUauuacaugacGUCgGCGCuCCg -3'
miRNA:   3'- cCGCGCCUCgAGCGCG----------CAGaUGCG-GG- -5'
21386 3' -60.6 NC_004812.1 + 98913 0.66 0.720173
Target:  5'- uGGCGCGGcAGaa-GCGC-UCcugGCGCUCg -3'
miRNA:   3'- -CCGCGCC-UCgagCGCGcAGa--UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 130860 0.66 0.720173
Target:  5'- cGGCG-GGGGCgcggCG-GCGUCgAUGaCCCa -3'
miRNA:   3'- -CCGCgCCUCGa---GCgCGCAGaUGC-GGG- -5'
21386 3' -60.6 NC_004812.1 + 149561 0.66 0.728677
Target:  5'- aGGCGaCGGGGgaCGCcgccccucGCGUCcccgggggaaaugUGCGCCg -3'
miRNA:   3'- -CCGC-GCCUCgaGCG--------CGCAG-------------AUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 67444 0.66 0.738985
Target:  5'- cGGCGaGGAGCagcaggaucaggUCgGCGUGUCcccacGCGUCCg -3'
miRNA:   3'- -CCGCgCCUCG------------AG-CGCGCAGa----UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 123575 0.66 0.720173
Target:  5'- cGGCGCGGccgGGCUCGaGuCGUCcguCGUCg -3'
miRNA:   3'- -CCGCGCC---UCGAGCgC-GCAGau-GCGGg -5'
21386 3' -60.6 NC_004812.1 + 92762 0.66 0.738985
Target:  5'- uGGCGCGGGccGCcCGCGgCGUUcAUGUCg -3'
miRNA:   3'- -CCGCGCCU--CGaGCGC-GCAGaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 20299 0.66 0.729618
Target:  5'- cGGCGCGccGGCgcagCGCGCG-CgcaggcacCGCCCc -3'
miRNA:   3'- -CCGCGCc-UCGa---GCGCGCaGau------GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 72004 0.66 0.729618
Target:  5'- gGGCGCGGucGuCUCGCG-GUCgcucggGgGCCg -3'
miRNA:   3'- -CCGCGCCu-C-GAGCGCgCAGa-----UgCGGg -5'
21386 3' -60.6 NC_004812.1 + 128560 0.66 0.742709
Target:  5'- aGCGCGGcgagcaggaaggagaGGCcgccgCGCGCGUCg--GUCCa -3'
miRNA:   3'- cCGCGCC---------------UCGa----GCGCGCAGaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 153994 0.66 0.775523
Target:  5'- cGGgGCGGGGC-CgGCGCGgaga-GUCCg -3'
miRNA:   3'- -CCgCGCCUCGaG-CGCGCagaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 80986 0.66 0.748267
Target:  5'- cGGCGCGcuggucggucGuGCUCGCGa-UCgGCGCCg -3'
miRNA:   3'- -CCGCGC----------CuCGAGCGCgcAGaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 104981 0.66 0.729618
Target:  5'- cGGCGCGcacgcGGC-CGCGgGcCgccgcgGCGCCCc -3'
miRNA:   3'- -CCGCGCc----UCGaGCGCgCaGa-----UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 72185 0.66 0.748267
Target:  5'- gGGUGCGGccgggggccccGGgUCGuCGCGgg-GCGUCCg -3'
miRNA:   3'- -CCGCGCC-----------UCgAGC-GCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 74399 0.66 0.738985
Target:  5'- gGGCGCGGGcCUUG-GCGUacGCGCUa -3'
miRNA:   3'- -CCGCGCCUcGAGCgCGCAgaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 107726 0.66 0.720173
Target:  5'- aGGCGUGGuAGg-UGCGCGcCaGgGCCCg -3'
miRNA:   3'- -CCGCGCC-UCgaGCGCGCaGaUgCGGG- -5'
21386 3' -60.6 NC_004812.1 + 128104 0.66 0.720173
Target:  5'- aGGCGCGu-GCgCGCGCGguagCgcacguugGCGCCg -3'
miRNA:   3'- -CCGCGCcuCGaGCGCGCa---Ga-------UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 133068 0.66 0.738985
Target:  5'- gGGCGCGGGGg--GCG-GUCc-CGCCCc -3'
miRNA:   3'- -CCGCGCCUCgagCGCgCAGauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 67269 0.66 0.757457
Target:  5'- aGGgGCccGAGCUC-CGCGUCgggccGgGCCCc -3'
miRNA:   3'- -CCgCGc-CUCGAGcGCGCAGa----UgCGGG- -5'
21386 3' -60.6 NC_004812.1 + 47732 0.66 0.720173
Target:  5'- aGGCgGCGGGGUgcugcagaaaaUCGCgGCGcucuUCUGCGuuCCCg -3'
miRNA:   3'- -CCG-CGCCUCG-----------AGCG-CGC----AGAUGC--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.