miRNA display CGI


Results 1 - 20 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 6838 0.66 0.720173
Target:  5'- gGGCgGCGGccCUCGCG-GUCggcgagGCgGCCCg -3'
miRNA:   3'- -CCG-CGCCucGAGCGCgCAGa-----UG-CGGG- -5'
21386 3' -60.6 NC_004812.1 + 129039 0.66 0.719225
Target:  5'- gGGgGCGGGGC-CGCGgCGccgggccggcucuUCUugcGCGCCg -3'
miRNA:   3'- -CCgCGCCUCGaGCGC-GC-------------AGA---UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 99802 0.66 0.729618
Target:  5'- cGGCGCGccgccAGCUgcgcCGCGCGaacgGCGCCg -3'
miRNA:   3'- -CCGCGCc----UCGA----GCGCGCaga-UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 129357 0.66 0.729618
Target:  5'- aGGCGCauGAGCaccaGCGCGUCgcGCGUgCg -3'
miRNA:   3'- -CCGCGc-CUCGag--CGCGCAGa-UGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 107726 0.66 0.720173
Target:  5'- aGGCGUGGuAGg-UGCGCGcCaGgGCCCg -3'
miRNA:   3'- -CCGCGCC-UCgaGCGCGCaGaUgCGGG- -5'
21386 3' -60.6 NC_004812.1 + 130860 0.66 0.720173
Target:  5'- cGGCG-GGGGCgcggCG-GCGUCgAUGaCCCa -3'
miRNA:   3'- -CCGCgCCUCGa---GCgCGCAGaUGC-GGG- -5'
21386 3' -60.6 NC_004812.1 + 98913 0.66 0.720173
Target:  5'- uGGCGCGGcAGaa-GCGC-UCcugGCGCUCg -3'
miRNA:   3'- -CCGCGCC-UCgagCGCGcAGa--UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 143307 0.66 0.720173
Target:  5'- cGGCGCGGcGGa--GaCGCGg--ACGCCCc -3'
miRNA:   3'- -CCGCGCC-UCgagC-GCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 21380 0.66 0.719225
Target:  5'- cGCGC-GAGCUcCGCGCcgcggccGUCU-CGCCg -3'
miRNA:   3'- cCGCGcCUCGA-GCGCG-------CAGAuGCGGg -5'
21386 3' -60.6 NC_004812.1 + 128104 0.66 0.720173
Target:  5'- aGGCGCGu-GCgCGCGCGguagCgcacguugGCGCCg -3'
miRNA:   3'- -CCGCGCcuCGaGCGCGCa---Ga-------UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 123575 0.66 0.720173
Target:  5'- cGGCGCGGccgGGCUCGaGuCGUCcguCGUCg -3'
miRNA:   3'- -CCGCGCC---UCGAGCgC-GCAGau-GCGGg -5'
21386 3' -60.6 NC_004812.1 + 85375 0.66 0.729618
Target:  5'- uGGaCGCcGAGCU-GUGCuUCggGCGCCCg -3'
miRNA:   3'- -CC-GCGcCUCGAgCGCGcAGa-UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 20299 0.66 0.729618
Target:  5'- cGGCGCGccGGCgcagCGCGCG-CgcaggcacCGCCCc -3'
miRNA:   3'- -CCGCGCc-UCGa---GCGCGCaGau------GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 43487 0.66 0.719225
Target:  5'- aGGuCGCGGcGCgucucggUGCGCGUCagccgcuUugGCUCg -3'
miRNA:   3'- -CC-GCGCCuCGa------GCGCGCAG-------AugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 47732 0.66 0.720173
Target:  5'- aGGCgGCGGGGUgcugcagaaaaUCGCgGCGcucuUCUGCGuuCCCg -3'
miRNA:   3'- -CCG-CGCCUCG-----------AGCG-CGC----AGAUGC--GGG- -5'
21386 3' -60.6 NC_004812.1 + 32761 0.66 0.729618
Target:  5'- aGGCccaGGGGUcgcacUCGCcCGUCgcgUGCGCCCg -3'
miRNA:   3'- -CCGcg-CCUCG-----AGCGcGCAG---AUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 83863 0.66 0.720173
Target:  5'- cGGCGgGGGGCg---GCG-CUGcCGCCCc -3'
miRNA:   3'- -CCGCgCCUCGagcgCGCaGAU-GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 153994 0.66 0.775523
Target:  5'- cGGgGCGGGGC-CgGCGCGgaga-GUCCg -3'
miRNA:   3'- -CCgCGCCUCGaG-CGCGCagaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 149561 0.66 0.728677
Target:  5'- aGGCGaCGGGGgaCGCcgccccucGCGUCcccgggggaaaugUGCGCCg -3'
miRNA:   3'- -CCGC-GCCUCgaGCG--------CGCAG-------------AUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 94758 0.66 0.720173
Target:  5'- cGGCGCuggccgccGAGUUCGCccGCGUCcacccggagUGgGCCCa -3'
miRNA:   3'- -CCGCGc-------CUCGAGCG--CGCAG---------AUgCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.