miRNA display CGI


Results 1 - 20 of 729 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 7695 0.74 0.298972
Target:  5'- gGGCGCGGGGgUCGCGCcgaGUCcGCGgCg -3'
miRNA:   3'- -CCGCGCCUCgAGCGCG---CAGaUGCgGg -5'
21386 3' -60.6 NC_004812.1 + 130369 0.75 0.267263
Target:  5'- cGGCGCGGccgugaagcGGCcCGUgGCGUC-GCGCCCg -3'
miRNA:   3'- -CCGCGCC---------UCGaGCG-CGCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 75262 0.75 0.27338
Target:  5'- uGGCGCGGAcca-GCGCGUCcUugGCCUc -3'
miRNA:   3'- -CCGCGCCUcgagCGCGCAG-AugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 138148 0.75 0.279609
Target:  5'- gGGCGCGGGGC-CGCGCccccccgCcGCGCCa -3'
miRNA:   3'- -CCGCGCCUCGaGCGCGca-----GaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 147570 0.75 0.285311
Target:  5'- cGGCGCGGccgcguacggcauGGCUCGgGCGUgaaUGCugGCCCg -3'
miRNA:   3'- -CCGCGCC-------------UCGAGCgCGCAg--AUG--CGGG- -5'
21386 3' -60.6 NC_004812.1 + 52899 0.75 0.28595
Target:  5'- cGGUGCaGGGCUCGaggGCGUC-GCGCUCg -3'
miRNA:   3'- -CCGCGcCUCGAGCg--CGCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 127755 0.75 0.28595
Target:  5'- cGGCGCGGcGGCggggUC-CGCGUCgGCGUCCg -3'
miRNA:   3'- -CCGCGCC-UCG----AGcGCGCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 129150 0.75 0.28595
Target:  5'- cGCGCGGcGC-CGCccGCGUCUGCGUCg -3'
miRNA:   3'- cCGCGCCuCGaGCG--CGCAGAUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 125287 0.75 0.292404
Target:  5'- cGCGCGaGAGCgccgCGCGCGgaaggcCUGCGCgCg -3'
miRNA:   3'- cCGCGC-CUCGa---GCGCGCa-----GAUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 72359 0.75 0.267263
Target:  5'- gGGCGgGGGGuCUCcCGCGUCgucggACGCCa -3'
miRNA:   3'- -CCGCgCCUC-GAGcGCGCAGa----UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 155297 0.75 0.267263
Target:  5'- gGGCGCGGcggGGCcCGgGgGUCgGCGCCCc -3'
miRNA:   3'- -CCGCGCC---UCGaGCgCgCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 125955 0.76 0.243898
Target:  5'- cGCGCGGccccGGUccCGCGCGUCccGCGCCCc -3'
miRNA:   3'- cCGCGCC----UCGa-GCGCGCAGa-UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 98720 0.84 0.075013
Target:  5'- cGGCGCGGGGUcguucUCGCGCGggggCaGCGCCCc -3'
miRNA:   3'- -CCGCGCCUCG-----AGCGCGCa---GaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 103651 0.83 0.087411
Target:  5'- gGGCGCGGAGCUCggcgcggaagaaGCGCGUCaGgGCCUc -3'
miRNA:   3'- -CCGCGCCUCGAG------------CGCGCAGaUgCGGG- -5'
21386 3' -60.6 NC_004812.1 + 45519 0.81 0.118268
Target:  5'- aGGCGCGaGGGCUCGC-CGUC-GCGCCa -3'
miRNA:   3'- -CCGCGC-CUCGAGCGcGCAGaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 31744 0.8 0.130641
Target:  5'- aGGCGCGGGGCggggGCGCG---GCGCCCg -3'
miRNA:   3'- -CCGCGCCUCGag--CGCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 101948 0.77 0.21206
Target:  5'- cGGCGCGG-GCggCGgGCGUCaggggccgcggACGCCCg -3'
miRNA:   3'- -CCGCGCCuCGa-GCgCGCAGa----------UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 113676 0.76 0.227508
Target:  5'- -cCGCGGcguGCUCGCGCucgacgagcUCUGCGCCCg -3'
miRNA:   3'- ccGCGCCu--CGAGCGCGc--------AGAUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 94119 0.76 0.232865
Target:  5'- uGGUGCGGGGcCUCGCGCacGUCUggACGCaggCCg -3'
miRNA:   3'- -CCGCGCCUC-GAGCGCG--CAGA--UGCG---GG- -5'
21386 3' -60.6 NC_004812.1 + 98436 0.76 0.232865
Target:  5'- cGGcCGCGGGGCggcagGCGCGgggGCGCCCc -3'
miRNA:   3'- -CC-GCGCCUCGag---CGCGCagaUGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.