miRNA display CGI


Results 1 - 20 of 729 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 99 0.69 0.551428
Target:  5'- gGGC-CGGGGCgCGCGCGgggccgggaGCCCg -3'
miRNA:   3'- -CCGcGCCUCGaGCGCGCagaug----CGGG- -5'
21386 3' -60.6 NC_004812.1 + 144 0.69 0.593932
Target:  5'- cGCGUGGcGC-CGCGcCG-CcGCGCCCg -3'
miRNA:   3'- cCGCGCCuCGaGCGC-GCaGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 428 0.74 0.319356
Target:  5'- cGCGCGGcGCUCuCGCG-C-GCGCCCg -3'
miRNA:   3'- cCGCGCCuCGAGcGCGCaGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 447 0.76 0.243898
Target:  5'- cGCGCGGccccGGUccCGCGCGUCccGCGCCCc -3'
miRNA:   3'- cCGCGCC----UCGa-GCGCGCAGa-UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 470 0.69 0.564868
Target:  5'- cGGCGCGccuGCgugCGCacGCGcCUGCuGCCCg -3'
miRNA:   3'- -CCGCGCcu-CGa--GCG--CGCaGAUG-CGGG- -5'
21386 3' -60.6 NC_004812.1 + 523 0.7 0.508036
Target:  5'- cGGgGCGG-GCcCGCGCGcCcGgGCCCu -3'
miRNA:   3'- -CCgCGCCuCGaGCGCGCaGaUgCGGG- -5'
21386 3' -60.6 NC_004812.1 + 585 0.67 0.691457
Target:  5'- cGGCGCGGcccccGGCccCGgGCGUCcccucccccGCGCCg -3'
miRNA:   3'- -CCGCGCC-----UCGa-GCgCGCAGa--------UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 700 0.72 0.427831
Target:  5'- gGGUcCGGAGCUcCGUcgGCGUCgGCGCCg -3'
miRNA:   3'- -CCGcGCCUCGA-GCG--CGCAGaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 708 0.72 0.394658
Target:  5'- cGGCGCGGcAGCcCGgGCGcCggcccCGCCCc -3'
miRNA:   3'- -CCGCGCC-UCGaGCgCGCaGau---GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 1636 0.7 0.517355
Target:  5'- cGCGCGGGuCcCGCGCGgcc-CGCCCg -3'
miRNA:   3'- cCGCGCCUcGaGCGCGCagauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 2057 0.7 0.495112
Target:  5'- gGGCGCGGgggagggGGCgCGCcccccGCGUCUACcaguccucggggcgGCCCg -3'
miRNA:   3'- -CCGCGCC-------UCGaGCG-----CGCAGAUG--------------CGGG- -5'
21386 3' -60.6 NC_004812.1 + 2152 0.69 0.545697
Target:  5'- cGgGCGGGGCUCGCGgCG---GCGgCCa -3'
miRNA:   3'- cCgCGCCUCGAGCGC-GCagaUGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 2247 0.75 0.28595
Target:  5'- cGGCGCGGcGGCggggUC-CGCGUCgGCGUCCg -3'
miRNA:   3'- -CCGCGCC-UCG----AGcGCGCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 2344 0.68 0.623225
Target:  5'- aGCGCGG-GCggcaGgGCGUCgg-GCCCg -3'
miRNA:   3'- cCGCGCCuCGag--CgCGCAGaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 2369 0.67 0.662334
Target:  5'- cGGCGCGcGcGGCgUCGCG-GUCcaGCGCCa -3'
miRNA:   3'- -CCGCGC-C-UCG-AGCGCgCAGa-UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 2441 0.7 0.489618
Target:  5'- aGGCGCGGuGCgaGUGCGcCU-CGCCg -3'
miRNA:   3'- -CCGCGCCuCGagCGCGCaGAuGCGGg -5'
21386 3' -60.6 NC_004812.1 + 2565 0.67 0.691457
Target:  5'- cGGCGgcaGGGGCacggGCGUGUCgg-GCCCg -3'
miRNA:   3'- -CCGCg--CCUCGag--CGCGCAGaugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 2596 0.66 0.720173
Target:  5'- aGGCGCGu-GCgCGCGCGguagCgcacguugGCGCCg -3'
miRNA:   3'- -CCGCGCcuCGaGCGCGCa---Ga-------UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 2638 0.72 0.411037
Target:  5'- aGGCGCGGcGGCg-GCGCGUCcggguagagGCGCgCg -3'
miRNA:   3'- -CCGCGCC-UCGagCGCGCAGa--------UGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 2732 0.69 0.593932
Target:  5'- cGGCGCGGcgcAGgUCGCGCG-CggcGgGCCa -3'
miRNA:   3'- -CCGCGCC---UCgAGCGCGCaGa--UgCGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.