miRNA display CGI


Results 1 - 20 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 156554 0.69 0.593932
Target:  5'- cGCGUGGcGC-CGCGcCG-CcGCGCCCg -3'
miRNA:   3'- cCGCGCCuCGaGCGC-GCaGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 156509 0.69 0.551428
Target:  5'- gGGC-CGGGGCgCGCGCGgggccgggaGCCCg -3'
miRNA:   3'- -CCGcGCCUCGaGCGCGCagaug----CGGG- -5'
21386 3' -60.6 NC_004812.1 + 156378 0.66 0.757457
Target:  5'- aGGagaGCGGGGC-CGCGgGggccggggCUGCGCgacCCg -3'
miRNA:   3'- -CCg--CGCCUCGaGCGCgCa-------GAUGCG---GG- -5'
21386 3' -60.6 NC_004812.1 + 156335 0.73 0.370897
Target:  5'- cGGCgGCGGAGCgCGCGCGggagACcCCCc -3'
miRNA:   3'- -CCG-CGCCUCGaGCGCGCaga-UGcGGG- -5'
21386 3' -60.6 NC_004812.1 + 156226 0.7 0.53619
Target:  5'- gGGgGCGGGGCgC-CGCGggaUGCGCCg -3'
miRNA:   3'- -CCgCGCCUCGaGcGCGCag-AUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 156188 0.75 0.292404
Target:  5'- cGCGCGaGAGCgccgCGCGCGgaaggcCUGCGCgCg -3'
miRNA:   3'- cCGCGC-CUCGa---GCGCGCa-----GAUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 156144 0.67 0.662334
Target:  5'- cGCGCGGAcGCgggGCGCGgg-ACGCgCg -3'
miRNA:   3'- cCGCGCCU-CGag-CGCGCagaUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 156078 0.68 0.603679
Target:  5'- aGGCGgGaGGGCccgggCGCGCGggccCGCCCc -3'
miRNA:   3'- -CCGCgC-CUCGa----GCGCGCagauGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 155894 0.66 0.766545
Target:  5'- aGGgGCGGGGCcggCGCcCGggCUgccGCGCCg -3'
miRNA:   3'- -CCgCGCCUCGa--GCGcGCa-GA---UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 155775 0.68 0.652572
Target:  5'- cGCGCGGGGCccucCGgGCGUCggacacCGCUUc -3'
miRNA:   3'- cCGCGCCUCGa---GCgCGCAGau----GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 155732 0.69 0.564868
Target:  5'- gGGUGgGGGGCgCGCGCGggcggggCUcGCGgCCg -3'
miRNA:   3'- -CCGCgCCUCGaGCGCGCa------GA-UGCgGG- -5'
21386 3' -60.6 NC_004812.1 + 155297 0.75 0.267263
Target:  5'- gGGCGCGGcggGGCcCGgGgGUCgGCGCCCc -3'
miRNA:   3'- -CCGCGCC---UCGaGCgCgCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 155230 0.72 0.402795
Target:  5'- cGGCGCGGGGCgggccgucgCGCacgGCGUUUGCauaGCCg -3'
miRNA:   3'- -CCGCGCCUCGa--------GCG---CGCAGAUG---CGGg -5'
21386 3' -60.6 NC_004812.1 + 155025 0.7 0.526741
Target:  5'- aGGCGgGGAGC-CGUGCGgggGgGaCCCg -3'
miRNA:   3'- -CCGCgCCUCGaGCGCGCagaUgC-GGG- -5'
21386 3' -60.6 NC_004812.1 + 154982 0.73 0.354854
Target:  5'- cGCGCGGgacccgcgcgcacGGUcccUCGCGCGgg-GCGCCCg -3'
miRNA:   3'- cCGCGCC-------------UCG---AGCGCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 154951 0.69 0.563905
Target:  5'- cGGCGCcgcggccaacgggGGAGCg-GCGCGUCaucgaucCGCCUa -3'
miRNA:   3'- -CCGCG-------------CCUCGagCGCGCAGau-----GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 154867 0.72 0.411037
Target:  5'- gGGCGCGG-GCUCGggcCGCGgagGCGCgCg -3'
miRNA:   3'- -CCGCGCCuCGAGC---GCGCagaUGCGgG- -5'
21386 3' -60.6 NC_004812.1 + 154547 0.66 0.757457
Target:  5'- -aCGCGGGGggCGCGCcccCUcccccGCGCCCc -3'
miRNA:   3'- ccGCGCCUCgaGCGCGca-GA-----UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 154476 0.66 0.720173
Target:  5'- cGGCGCGGccgGGCUCGaGuCGUCcguCGUCg -3'
miRNA:   3'- -CCGCGCC---UCGAGCgC-GCAGau-GCGGg -5'
21386 3' -60.6 NC_004812.1 + 154236 0.71 0.480527
Target:  5'- uGGCGCuGGAccGCgacgccgCGCGCGcCgggcccgACGCCCu -3'
miRNA:   3'- -CCGCG-CCU--CGa------GCGCGCaGa------UGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.