miRNA display CGI


Results 1 - 20 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 135237 1.14 0.000632
Target:  5'- cGGCGCGGAGCUCGCGCGUCUACGCCCg -3'
miRNA:   3'- -CCGCGCCUCGAGCGCGCAGAUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 13066 0.85 0.061083
Target:  5'- aGCGacaGGAGCUCGCGgGUCaGCGCCCc -3'
miRNA:   3'- cCGCg--CCUCGAGCGCgCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 125726 0.84 0.069464
Target:  5'- gGGCGCGGGGC-CGCGCG-CUGagcCGCCCc -3'
miRNA:   3'- -CCGCGCCUCGaGCGCGCaGAU---GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 98720 0.84 0.075013
Target:  5'- cGGCGCGGGGUcguucUCGCGCGggggCaGCGCCCc -3'
miRNA:   3'- -CCGCGCCUCG-----AGCGCGCa---GaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 103651 0.83 0.087411
Target:  5'- gGGCGCGGAGCUCggcgcggaagaaGCGCGUCaGgGCCUc -3'
miRNA:   3'- -CCGCGCCUCGAG------------CGCGCAGaUgCGGG- -5'
21386 3' -60.6 NC_004812.1 + 124249 0.83 0.091961
Target:  5'- uGGCGgGGGGCgCGCGCGgcgGCGCCCc -3'
miRNA:   3'- -CCGCgCCUCGaGCGCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 45519 0.81 0.118268
Target:  5'- aGGCGCGaGGGCUCGC-CGUC-GCGCCa -3'
miRNA:   3'- -CCGCGC-CUCGAGCGcGCAGaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 50016 0.8 0.130641
Target:  5'- cGCG-GGAGacuccaUCGCGcCGUCUGCGCCCg -3'
miRNA:   3'- cCGCgCCUCg-----AGCGC-GCAGAUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 31744 0.8 0.130641
Target:  5'- aGGCGCGGGGCggggGCGCG---GCGCCCg -3'
miRNA:   3'- -CCGCGCCUCGag--CGCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 140621 0.79 0.162949
Target:  5'- uGGCGCGGGGC-CGCgGgGUCgGCGCCg -3'
miRNA:   3'- -CCGCGCCUCGaGCG-CgCAGaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 43865 0.79 0.166953
Target:  5'- gGGCGCGGcGGCgccgcCGCGCgGUUcGCGCCCg -3'
miRNA:   3'- -CCGCGCC-UCGa----GCGCG-CAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 79557 0.78 0.192874
Target:  5'- aGGCGCGcGAGCgccucgccgCGCGCGUgcGCGCCa -3'
miRNA:   3'- -CCGCGC-CUCGa--------GCGCGCAgaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 136298 0.77 0.197523
Target:  5'- gGGgGCGGuGCcugCGCGCGcgCUGCGCCg -3'
miRNA:   3'- -CCgCGCCuCGa--GCGCGCa-GAUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 89289 0.77 0.205651
Target:  5'- cGGCGCGGAGCcccggcgucgcgcuUCGCGCaGUUcugcgGCGCCg -3'
miRNA:   3'- -CCGCGCCUCG--------------AGCGCG-CAGa----UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 112233 0.77 0.21206
Target:  5'- uGCGCGGcGC-CGCGgG-CUGCGCCCc -3'
miRNA:   3'- cCGCGCCuCGaGCGCgCaGAUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 101948 0.77 0.21206
Target:  5'- cGGCGCGG-GCggCGgGCGUCaggggccgcggACGCCCg -3'
miRNA:   3'- -CCGCGCCuCGa-GCgCGCAGa----------UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 91212 0.77 0.21206
Target:  5'- gGGCGCGGcguccAGCUCgcggaGCGCGUCgauccGCGCCa -3'
miRNA:   3'- -CCGCGCC-----UCGAG-----CGCGCAGa----UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 113676 0.76 0.227508
Target:  5'- -cCGCGGcguGCUCGCGCucgacgagcUCUGCGCCCg -3'
miRNA:   3'- ccGCGCCu--CGAGCGCGc--------AGAUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 98436 0.76 0.232865
Target:  5'- cGGcCGCGGGGCggcagGCGCGgggGCGCCCc -3'
miRNA:   3'- -CC-GCGCCUCGag---CGCGCagaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 94119 0.76 0.232865
Target:  5'- uGGUGCGGGGcCUCGCGCacGUCUggACGCaggCCg -3'
miRNA:   3'- -CCGCGCCUC-GAGCGCG--CAGA--UGCG---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.