miRNA display CGI


Results 21 - 40 of 729 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 3' -60.6 NC_004812.1 + 84639 0.76 0.243898
Target:  5'- gGGCGCGuGAGCcucccgcggCGCGCGUCgcggcagggcCGCCCc -3'
miRNA:   3'- -CCGCGC-CUCGa--------GCGCGCAGau--------GCGGG- -5'
21386 3' -60.6 NC_004812.1 + 447 0.76 0.243898
Target:  5'- cGCGCGGccccGGUccCGCGCGUCccGCGCCCc -3'
miRNA:   3'- cCGCGCC----UCGa-GCGCGCAGa-UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 125955 0.76 0.243898
Target:  5'- cGCGCGGccccGGUccCGCGCGUCccGCGCCCc -3'
miRNA:   3'- cCGCGCC----UCGa-GCGCGCAGa-UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 81673 0.76 0.251876
Target:  5'- cGGCGCGcGAcggcucccccgacccGCUCGCGCGcCUgcacgcGCGCCUg -3'
miRNA:   3'- -CCGCGC-CU---------------CGAGCGCGCaGA------UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 63010 0.76 0.255361
Target:  5'- aGCGCGGGccgccgcguccGCgagCGCGCG-CUugGCCCc -3'
miRNA:   3'- cCGCGCCU-----------CGa--GCGCGCaGAugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 80217 0.75 0.261257
Target:  5'- cGGCGCccgccGGGCcaUCGCGCGcCUcgGCGCCCu -3'
miRNA:   3'- -CCGCGc----CUCG--AGCGCGCaGA--UGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 155297 0.75 0.267263
Target:  5'- gGGCGCGGcggGGCcCGgGgGUCgGCGCCCc -3'
miRNA:   3'- -CCGCGCC---UCGaGCgCgCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 130369 0.75 0.267263
Target:  5'- cGGCGCGGccgugaagcGGCcCGUgGCGUC-GCGCCCg -3'
miRNA:   3'- -CCGCGCC---------UCGaGCG-CGCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 72359 0.75 0.267263
Target:  5'- gGGCGgGGGGuCUCcCGCGUCgucggACGCCa -3'
miRNA:   3'- -CCGCgCCUC-GAGcGCGCAGa----UGCGGg -5'
21386 3' -60.6 NC_004812.1 + 29789 0.75 0.267263
Target:  5'- gGGCGCGGcggGGCcCGgGgGUCgGCGCCCc -3'
miRNA:   3'- -CCGCGCC---UCGaGCgCgCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 4861 0.75 0.267263
Target:  5'- cGGCGCGGccgugaagcGGCcCGUgGCGUC-GCGCCCg -3'
miRNA:   3'- -CCGCGCC---------UCGaGCG-CGCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 75262 0.75 0.27338
Target:  5'- uGGCGCGGAcca-GCGCGUCcUugGCCUc -3'
miRNA:   3'- -CCGCGCCUcgagCGCGCAG-AugCGGG- -5'
21386 3' -60.6 NC_004812.1 + 138148 0.75 0.279609
Target:  5'- gGGCGCGGGGC-CGCGCccccccgCcGCGCCa -3'
miRNA:   3'- -CCGCGCCUCGaGCGCGca-----GaUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 147570 0.75 0.285311
Target:  5'- cGGCGCGGccgcguacggcauGGCUCGgGCGUgaaUGCugGCCCg -3'
miRNA:   3'- -CCGCGCC-------------UCGAGCgCGCAg--AUG--CGGG- -5'
21386 3' -60.6 NC_004812.1 + 2247 0.75 0.28595
Target:  5'- cGGCGCGGcGGCggggUC-CGCGUCgGCGUCCg -3'
miRNA:   3'- -CCGCGCC-UCG----AGcGCGCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 13293 0.75 0.28595
Target:  5'- cGGCGCGGcggGGCgUC-CGCGUCUcCGCCg -3'
miRNA:   3'- -CCGCGCC---UCG-AGcGCGCAGAuGCGGg -5'
21386 3' -60.6 NC_004812.1 + 3642 0.75 0.28595
Target:  5'- cGCGCGGcGC-CGCccGCGUCUGCGUCg -3'
miRNA:   3'- cCGCGCCuCGaGCG--CGCAGAUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 52899 0.75 0.28595
Target:  5'- cGGUGCaGGGCUCGaggGCGUC-GCGCUCg -3'
miRNA:   3'- -CCGCGcCUCGAGCg--CGCAGaUGCGGG- -5'
21386 3' -60.6 NC_004812.1 + 129150 0.75 0.28595
Target:  5'- cGCGCGGcGC-CGCccGCGUCUGCGUCg -3'
miRNA:   3'- cCGCGCCuCGaGCG--CGCAGAUGCGGg -5'
21386 3' -60.6 NC_004812.1 + 127755 0.75 0.28595
Target:  5'- cGGCGCGGcGGCggggUC-CGCGUCgGCGUCCg -3'
miRNA:   3'- -CCGCGCC-UCG----AGcGCGCAGaUGCGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.