miRNA display CGI


Results 61 - 80 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 109885 0.67 0.965881
Target:  5'- gACGuGGCuCUGCgggagccgauuccgUUCGAGCGGcUGCACg -3'
miRNA:   3'- -UGU-UCGuGAUG--------------AAGCUCGCC-ACGUGg -5'
21386 5' -52.3 NC_004812.1 + 78173 0.67 0.96352
Target:  5'- gACGGGCuggAUgagCGGGaGGUGCGCCg -3'
miRNA:   3'- -UGUUCGugaUGaa-GCUCgCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 140427 0.67 0.96352
Target:  5'- ---cGCGCUGCUggcgaUCGAGCgcccccagucgGGcGCGCCg -3'
miRNA:   3'- uguuCGUGAUGA-----AGCUCG-----------CCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 129411 0.67 0.96352
Target:  5'- cGCGGGCGCgGCggCGcGGCGGcgGgGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaaGC-UCGCCa-CgUGG- -5'
21386 5' -52.3 NC_004812.1 + 3903 0.67 0.96352
Target:  5'- cGCGGGCGCgGCggCGcGGCGGcgGgGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaaGC-UCGCCa-CgUGG- -5'
21386 5' -52.3 NC_004812.1 + 1331 0.67 0.959953
Target:  5'- cGCGGGCGgU-CcgCGGGCGGUcCGCCg -3'
miRNA:   3'- -UGUUCGUgAuGaaGCUCGCCAcGUGG- -5'
21386 5' -52.3 NC_004812.1 + 67786 0.67 0.959953
Target:  5'- -gGGGCGCgggcgGCUUCGGGgGGggcggGC-CCg -3'
miRNA:   3'- ugUUCGUGa----UGAAGCUCgCCa----CGuGG- -5'
21386 5' -52.3 NC_004812.1 + 32232 0.67 0.959953
Target:  5'- cGCGGGCGgU-CcgCGGGCGGUcCGCCg -3'
miRNA:   3'- -UGUUCGUgAuGaaGCUCGCCAcGUGG- -5'
21386 5' -52.3 NC_004812.1 + 129664 0.67 0.959953
Target:  5'- -gGGGCACgACUgCGggcuGGCGGUGgACCu -3'
miRNA:   3'- ugUUCGUGaUGAaGC----UCGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 103741 0.67 0.959584
Target:  5'- cACcGGCGCUACUUCaccuucgGGGCGGgcuacgUGUACUu -3'
miRNA:   3'- -UGuUCGUGAUGAAG-------CUCGCC------ACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 119219 0.68 0.956152
Target:  5'- cGCGGcCGCUGCUgcaccgCGGG-GGUGCGCUu -3'
miRNA:   3'- -UGUUcGUGAUGAa-----GCUCgCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 97438 0.68 0.956152
Target:  5'- cGCugcuGCAgCUGCUgagccgccggUCGAaccugGCGGUGUACCa -3'
miRNA:   3'- -UGuu--CGU-GAUGA----------AGCU-----CGCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 117030 0.68 0.956152
Target:  5'- -gGGGCGCgUGCagUUCGA--GGUGCACCa -3'
miRNA:   3'- ugUUCGUG-AUG--AAGCUcgCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 125770 0.68 0.956152
Target:  5'- cCGGGCGCgccccCGGGCGGcgccugGCGCCg -3'
miRNA:   3'- uGUUCGUGaugaaGCUCGCCa-----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 39378 0.68 0.954566
Target:  5'- uGCGGGCcaGCUGCUgaauggcccgcagCuGGCGGUGCguGCCg -3'
miRNA:   3'- -UGUUCG--UGAUGAa------------GcUCGCCACG--UGG- -5'
21386 5' -52.3 NC_004812.1 + 79202 0.68 0.952114
Target:  5'- gGCGGGguCcACgUCGGGCGGcgGCGCUu -3'
miRNA:   3'- -UGUUCguGaUGaAGCUCGCCa-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 41158 0.68 0.952114
Target:  5'- -gGGGCuuUAUUUCGAGCcccGGcGCGCCg -3'
miRNA:   3'- ugUUCGugAUGAAGCUCG---CCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 63826 0.68 0.952114
Target:  5'- gGCGAGUACUGCgugcaggacUCGcuGCuGGUGgGCCa -3'
miRNA:   3'- -UGUUCGUGAUGa--------AGCu-CG-CCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 77249 0.68 0.952114
Target:  5'- -gGGGCGCUGCccUCGcGgGG-GCGCCg -3'
miRNA:   3'- ugUUCGUGAUGa-AGCuCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 81085 0.68 0.952114
Target:  5'- uCGAcGCGCUGC---GGGCGGacgUGCACCg -3'
miRNA:   3'- uGUU-CGUGAUGaagCUCGCC---ACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.