miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 122228 0.67 0.972879
Target:  5'- gGCGGGCGCgggggGC-UCGgcGGCGGgGCGCg -3'
miRNA:   3'- -UGUUCGUGa----UGaAGC--UCGCCaCGUGg -5'
21386 5' -52.3 NC_004812.1 + 71922 0.67 0.972879
Target:  5'- cGCGGGCGCUGCagCG-GCGaGgacgGCGCg -3'
miRNA:   3'- -UGUUCGUGAUGaaGCuCGC-Ca---CGUGg -5'
21386 5' -52.3 NC_004812.1 + 103211 0.67 0.972879
Target:  5'- ---cGCGCUGCggaCGAGCGGcagguucagGCGCUc -3'
miRNA:   3'- uguuCGUGAUGaa-GCUCGCCa--------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 111555 0.67 0.972879
Target:  5'- uGCAccagcGGCGCUGCaugUUCGGcGUGGUGaGCCc -3'
miRNA:   3'- -UGU-----UCGUGAUG---AAGCU-CGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 48303 0.67 0.972879
Target:  5'- cGCAcGCGCgUGCgggcUCGGGCguGGUGC-CCg -3'
miRNA:   3'- -UGUuCGUG-AUGa---AGCUCG--CCACGuGG- -5'
21386 5' -52.3 NC_004812.1 + 153129 0.67 0.972879
Target:  5'- gGCGGGCGCgggggGC-UCGgcGGCGGgGCGCg -3'
miRNA:   3'- -UGUUCGUGa----UGaAGC--UCGCCaCGUGg -5'
21386 5' -52.3 NC_004812.1 + 123836 0.67 0.972879
Target:  5'- cCGGGCGCacGCgaCGGGCGaGUGCgACCc -3'
miRNA:   3'- uGUUCGUGa-UGaaGCUCGC-CACG-UGG- -5'
21386 5' -52.3 NC_004812.1 + 74922 0.67 0.971163
Target:  5'- uGCAGGCGCg----CGAGCgGGUcgggggagccgucgcGCGCCg -3'
miRNA:   3'- -UGUUCGUGaugaaGCUCG-CCA---------------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 140610 0.67 0.969977
Target:  5'- -gGAGCuGCUGCUggcgCGGggccGCGGggucgGCGCCg -3'
miRNA:   3'- ugUUCG-UGAUGAa---GCU----CGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 63722 0.67 0.969977
Target:  5'- cACAcGCGCUGCcg-GAGCG-UGCGCUg -3'
miRNA:   3'- -UGUuCGUGAUGaagCUCGCcACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 114238 0.67 0.969977
Target:  5'- aACAccGGCGaccuCUUCucGCGGUGCACg -3'
miRNA:   3'- -UGU--UCGUgau-GAAGcuCGCCACGUGg -5'
21386 5' -52.3 NC_004812.1 + 122001 0.67 0.969977
Target:  5'- cCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3'
miRNA:   3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 152641 0.67 0.969977
Target:  5'- gGCcGGCGC-GCggCGGGgGG-GCGCCg -3'
miRNA:   3'- -UGuUCGUGaUGaaGCUCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 131402 0.67 0.969977
Target:  5'- aGCGAGCAC-GCguccUGGGCGGacgUGCGCg -3'
miRNA:   3'- -UGUUCGUGaUGaa--GCUCGCC---ACGUGg -5'
21386 5' -52.3 NC_004812.1 + 152902 0.67 0.969977
Target:  5'- cCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3'
miRNA:   3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 86145 0.67 0.969977
Target:  5'- cCAcGCGCUACUcaaUCgGAGCGGagcgGUACUg -3'
miRNA:   3'- uGUuCGUGAUGA---AG-CUCGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 55369 0.67 0.969977
Target:  5'- --cGGCGCUGCggcccgUCGAGgcCGGcgcgGCGCCc -3'
miRNA:   3'- uguUCGUGAUGa-----AGCUC--GCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 89580 0.67 0.96686
Target:  5'- gGCGGGCGguucgccgccCUGCUgCGGGCGGccgGCcCCg -3'
miRNA:   3'- -UGUUCGU----------GAUGAaGCUCGCCa--CGuGG- -5'
21386 5' -52.3 NC_004812.1 + 85135 0.67 0.96686
Target:  5'- -gGGGCGCg----CGGGCGGgggcGCGCCu -3'
miRNA:   3'- ugUUCGUGaugaaGCUCGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 83498 0.67 0.96686
Target:  5'- -gGAGCGCgACggcCaGGCGGUGCGCg -3'
miRNA:   3'- ugUUCGUGaUGaa-GcUCGCCACGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.