miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 117111 0.72 0.783549
Target:  5'- -gAGGCGCggcCUcCGGGCGGcGCGCCa -3'
miRNA:   3'- ugUUCGUGau-GAaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 99434 0.73 0.754542
Target:  5'- aACAuGUACUGCUggaGGCGGUGgACCg -3'
miRNA:   3'- -UGUuCGUGAUGAagcUCGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 108751 0.73 0.754542
Target:  5'- uGCAGGCGCUGCggcugggGGGCGcGgggGCGCCu -3'
miRNA:   3'- -UGUUCGUGAUGaag----CUCGC-Ca--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 129085 0.74 0.693723
Target:  5'- gGCAGGCgGCggcgGCggCGGGCGGgcGCGCCg -3'
miRNA:   3'- -UGUUCG-UGa---UGaaGCUCGCCa-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 85381 0.76 0.609921
Target:  5'- cCGAGCugUGCUUCGGGCGcccggGgGCCg -3'
miRNA:   3'- uGUUCGugAUGAAGCUCGCca---CgUGG- -5'
21386 5' -52.3 NC_004812.1 + 68170 0.7 0.877027
Target:  5'- gGCAGGguCggcgGCcgCGGGCGGgggcGCGCCg -3'
miRNA:   3'- -UGUUCguGa---UGaaGCUCGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 44334 0.7 0.884277
Target:  5'- gGCGGGCGCgGCccaGAGCGGcGCGCg -3'
miRNA:   3'- -UGUUCGUGaUGaagCUCGCCaCGUGg -5'
21386 5' -52.3 NC_004812.1 + 97312 0.69 0.933504
Target:  5'- cACGAGCuc-GCggCGGGCGG-GUGCCg -3'
miRNA:   3'- -UGUUCGugaUGaaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 32472 0.69 0.933504
Target:  5'- cACAGGCGCgugagGCgcggcccgUCG-GCGGcGUACCg -3'
miRNA:   3'- -UGUUCGUGa----UGa-------AGCuCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 72823 0.69 0.928226
Target:  5'- cCAGGCACgggggGCUccccgCGAGCGGc-CGCCg -3'
miRNA:   3'- uGUUCGUGa----UGAa----GCUCGCCacGUGG- -5'
21386 5' -52.3 NC_004812.1 + 75808 0.69 0.922695
Target:  5'- gGCGGGCG--GCcgCGAGCGGcggcaGCGCCg -3'
miRNA:   3'- -UGUUCGUgaUGaaGCUCGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 73774 0.69 0.922695
Target:  5'- cCGGGUGCccgcggGCUccgCGAGCGGggcggGCGCCg -3'
miRNA:   3'- uGUUCGUGa-----UGAa--GCUCGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 90055 0.69 0.916913
Target:  5'- cGCAAGC-CcACggcaGAGCgGGUGUACCg -3'
miRNA:   3'- -UGUUCGuGaUGaag-CUCG-CCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 94272 0.69 0.916913
Target:  5'- cGCGGGCGCgcgccGCggccCGGGCG-UGCGCCu -3'
miRNA:   3'- -UGUUCGUGa----UGaa--GCUCGCcACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 37920 0.69 0.916913
Target:  5'- gACGAGCACUGCgugaCGA--GGcGCGCCa -3'
miRNA:   3'- -UGUUCGUGAUGaa--GCUcgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 8311 0.7 0.898066
Target:  5'- aGCGAGCGCaGCagCGGGCcg-GCGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaaGCUCGccaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 89840 0.7 0.898066
Target:  5'- cGCGGGUGCagGCgugCGAGuCGGUGC-CCg -3'
miRNA:   3'- -UGUUCGUGa-UGaa-GCUC-GCCACGuGG- -5'
21386 5' -52.3 NC_004812.1 + 110027 0.7 0.89403
Target:  5'- -aGAGCGCguguagucccCGGGCGGUGCGCg -3'
miRNA:   3'- ugUUCGUGaugaa-----GCUCGCCACGUGg -5'
21386 5' -52.3 NC_004812.1 + 39016 0.7 0.891291
Target:  5'- -gAGGCGCUGCUUgauggGGGCGGUGgugacgagcaCGCCg -3'
miRNA:   3'- ugUUCGUGAUGAAg----CUCGCCAC----------GUGG- -5'
21386 5' -52.3 NC_004812.1 + 117268 0.7 0.884277
Target:  5'- cCGAGCGCUcCggCGGGCGGggGCGgCg -3'
miRNA:   3'- uGUUCGUGAuGaaGCUCGCCa-CGUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.