miRNA display CGI


Results 41 - 60 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 82661 0.69 0.916913
Target:  5'- gGCGacGGCuuccgGCU-CUUCGGGCGcuucGUGCGCCa -3'
miRNA:   3'- -UGU--UCG-----UGAuGAAGCUCGC----CACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 37920 0.69 0.916913
Target:  5'- gACGAGCACUGCgugaCGA--GGcGCGCCa -3'
miRNA:   3'- -UGUUCGUGAUGaa--GCUcgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 94272 0.69 0.916913
Target:  5'- cGCGGGCGCgcgccGCggccCGGGCG-UGCGCCu -3'
miRNA:   3'- -UGUUCGUGa----UGaa--GCUCGCcACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 90055 0.69 0.916913
Target:  5'- cGCAAGC-CcACggcaGAGCgGGUGUACCg -3'
miRNA:   3'- -UGUUCGuGaUGaag-CUCG-CCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 73774 0.69 0.922695
Target:  5'- cCGGGUGCccgcggGCUccgCGAGCGGggcggGCGCCg -3'
miRNA:   3'- uGUUCGUGa-----UGAa--GCUCGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 75808 0.69 0.922695
Target:  5'- gGCGGGCG--GCcgCGAGCGGcggcaGCGCCg -3'
miRNA:   3'- -UGUUCGUgaUGaaGCUCGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 72823 0.69 0.928226
Target:  5'- cCAGGCACgggggGCUccccgCGAGCGGc-CGCCg -3'
miRNA:   3'- uGUUCGUGa----UGAa----GCUCGCCacGUGG- -5'
21386 5' -52.3 NC_004812.1 + 131557 0.69 0.928226
Target:  5'- cGCGuGGgACU-CgggCGAGCuGGUGCACCg -3'
miRNA:   3'- -UGU-UCgUGAuGaa-GCUCG-CCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 32472 0.69 0.933504
Target:  5'- cACAGGCGCgugagGCgcggcccgUCG-GCGGcGUACCg -3'
miRNA:   3'- -UGUUCGUGa----UGa-------AGCuCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 97312 0.69 0.933504
Target:  5'- cACGAGCuc-GCggCGGGCGG-GUGCCg -3'
miRNA:   3'- -UGUUCGugaUGaaGCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 79176 0.69 0.933504
Target:  5'- cCGAGCuGCUGCgg-GAGCuGGUGCAgCg -3'
miRNA:   3'- uGUUCG-UGAUGaagCUCG-CCACGUgG- -5'
21386 5' -52.3 NC_004812.1 + 45304 0.68 0.93853
Target:  5'- aACAGGagagACUugUUCGuucgcauccaGGCGG-GCGCCg -3'
miRNA:   3'- -UGUUCg---UGAugAAGC----------UCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 83458 0.68 0.93853
Target:  5'- gGCcAGCGCgUGCUggucCGcGGCGGcGCGCCg -3'
miRNA:   3'- -UGuUCGUG-AUGAa---GC-UCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 12621 0.68 0.93853
Target:  5'- -gAAGaCGCcGCcgCGAGCGGUcgGCGCCu -3'
miRNA:   3'- ugUUC-GUGaUGaaGCUCGCCA--CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 114659 0.68 0.93853
Target:  5'- cGCGGGCACcAUcaaGAGCGGgccgGUGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaagCUCGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 51194 0.68 0.93853
Target:  5'- cGCGGGCGCcggGCcccgcCGAGCGccgGCACCg -3'
miRNA:   3'- -UGUUCGUGa--UGaa---GCUCGCca-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 135968 0.68 0.93853
Target:  5'- -gGAGC-CUGCUcUCGgaggaGGCGGUGCGgCg -3'
miRNA:   3'- ugUUCGuGAUGA-AGC-----UCGCCACGUgG- -5'
21386 5' -52.3 NC_004812.1 + 27507 0.68 0.93853
Target:  5'- cACGAGCagggugGCcACgagcUCG-GCGGUGUACCa -3'
miRNA:   3'- -UGUUCG------UGaUGa---AGCuCGCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 83604 0.68 0.94047
Target:  5'- -gGAGCugUgcgugacgcuguuugACUcgcgCGAGCGGgGCGCCg -3'
miRNA:   3'- ugUUCGugA---------------UGAa---GCUCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 78923 0.68 0.941899
Target:  5'- gACGAcGCugUugUuggaccggcuggggUCGGG-GGUGCGCCg -3'
miRNA:   3'- -UGUU-CGugAugA--------------AGCUCgCCACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.