Results 21 - 40 of 147 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
21386 | 5' | -52.3 | NC_004812.1 | + | 115211 | 0.71 | 0.853915 |
Target: 5'- cGCGAGgGCgagggGCgUUCGuggcguugggGGUGGUGCACCa -3' miRNA: 3'- -UGUUCgUGa----UG-AAGC----------UCGCCACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 37691 | 0.71 | 0.86184 |
Target: 5'- gGCGAGCcgUGCcUCGGGgGGcGCGCCg -3' miRNA: 3'- -UGUUCGugAUGaAGCUCgCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 6790 | 0.71 | 0.86184 |
Target: 5'- gGCGAGCcgUGCcUCGGGgGGcGCGCCg -3' miRNA: 3'- -UGUUCGugAUGaAGCUCgCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 74862 | 0.7 | 0.869546 |
Target: 5'- aGCGAGCGCcGCa--GGGCGGccguccgGCGCCg -3' miRNA: 3'- -UGUUCGUGaUGaagCUCGCCa------CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 66550 | 0.7 | 0.869546 |
Target: 5'- cGCAGGCGCUgggcuccagucgGCggagggaCGAGCGGcUGCGCg -3' miRNA: 3'- -UGUUCGUGA------------UGaa-----GCUCGCC-ACGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 112542 | 0.7 | 0.877027 |
Target: 5'- uGCGGGCGCccgc-CGAGCGGgggggcGCGCCg -3' miRNA: 3'- -UGUUCGUGaugaaGCUCGCCa-----CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 68170 | 0.7 | 0.877027 |
Target: 5'- gGCAGGguCggcgGCcgCGGGCGGgggcGCGCCg -3' miRNA: 3'- -UGUUCguGa---UGaaGCUCGCCa---CGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 148169 | 0.7 | 0.884277 |
Target: 5'- cCGAGCGCUcCggCGGGCGGggGCGgCg -3' miRNA: 3'- uGUUCGUGAuGaaGCUCGCCa-CGUgG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 51435 | 0.7 | 0.884277 |
Target: 5'- cGCAGGCACgcgGCcgcUCGcaGGCGGgGCGCUa -3' miRNA: 3'- -UGUUCGUGa--UGa--AGC--UCGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 103706 | 0.7 | 0.884277 |
Target: 5'- uCGAGCGCgACgcccUCGAGCccUGCACCg -3' miRNA: 3'- uGUUCGUGaUGa---AGCUCGccACGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 44334 | 0.7 | 0.884277 |
Target: 5'- gGCGGGCGCgGCccaGAGCGGcGCGCg -3' miRNA: 3'- -UGUUCGUGaUGaagCUCGCCaCGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 117268 | 0.7 | 0.884277 |
Target: 5'- cCGAGCGCUcCggCGGGCGGggGCGgCg -3' miRNA: 3'- uGUUCGUGAuGaaGCUCGCCa-CGUgG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 39016 | 0.7 | 0.891291 |
Target: 5'- -gAGGCGCUGCUUgauggGGGCGGUGgugacgagcaCGCCg -3' miRNA: 3'- ugUUCGUGAUGAAg----CUCGCCAC----------GUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 110027 | 0.7 | 0.89403 |
Target: 5'- -aGAGCGCguguagucccCGGGCGGUGCGCg -3' miRNA: 3'- ugUUCGUGaugaa-----GCUCGCCACGUGg -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 8311 | 0.7 | 0.898066 |
Target: 5'- aGCGAGCGCaGCagCGGGCcg-GCGCCg -3' miRNA: 3'- -UGUUCGUGaUGaaGCUCGccaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 89840 | 0.7 | 0.898066 |
Target: 5'- cGCGGGUGCagGCgugCGAGuCGGUGC-CCg -3' miRNA: 3'- -UGUUCGUGa-UGaa-GCUC-GCCACGuGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 39212 | 0.7 | 0.898066 |
Target: 5'- aGCGAGCGCaGCagCGGGCcG-GCGCCg -3' miRNA: 3'- -UGUUCGUGaUGaaGCUCGcCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 102808 | 0.69 | 0.904596 |
Target: 5'- uACGAGCGCgACcUCuccacgGGGCGGcGCGCCu -3' miRNA: 3'- -UGUUCGUGaUGaAG------CUCGCCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 101016 | 0.69 | 0.910879 |
Target: 5'- cCAAGCGCUcGCUggCGAGCcuGGgGCGCUg -3' miRNA: 3'- uGUUCGUGA-UGAa-GCUCG--CCaCGUGG- -5' |
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21386 | 5' | -52.3 | NC_004812.1 | + | 96826 | 0.69 | 0.910879 |
Target: 5'- cCAAGaugcuguuCUACcUCGAGCGGUGCGa- -3' miRNA: 3'- uGUUCgu------GAUGaAGCUCGCCACGUgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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