miRNA display CGI


Results 21 - 40 of 147 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 37691 0.71 0.86184
Target:  5'- gGCGAGCcgUGCcUCGGGgGGcGCGCCg -3'
miRNA:   3'- -UGUUCGugAUGaAGCUCgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 37920 0.69 0.916913
Target:  5'- gACGAGCACUGCgugaCGA--GGcGCGCCa -3'
miRNA:   3'- -UGUUCGUGAUGaa--GCUcgCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 39016 0.7 0.891291
Target:  5'- -gAGGCGCUGCUUgauggGGGCGGUGgugacgagcaCGCCg -3'
miRNA:   3'- ugUUCGUGAUGAAg----CUCGCCAC----------GUGG- -5'
21386 5' -52.3 NC_004812.1 + 39212 0.7 0.898066
Target:  5'- aGCGAGCGCaGCagCGGGCcG-GCGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaaGCUCGcCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 39378 0.68 0.954566
Target:  5'- uGCGGGCcaGCUGCUgaauggcccgcagCuGGCGGUGCguGCCg -3'
miRNA:   3'- -UGUUCG--UGAUGAa------------GcUCGCCACG--UGG- -5'
21386 5' -52.3 NC_004812.1 + 39551 0.66 0.975572
Target:  5'- uGCGGGCcgucGCggGCgaUGAGCGGcuggUGCACCu -3'
miRNA:   3'- -UGUUCG----UGa-UGaaGCUCGCC----ACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 41158 0.68 0.952114
Target:  5'- -gGGGCuuUAUUUCGAGCcccGGcGCGCCg -3'
miRNA:   3'- ugUUCGugAUGAAGCUCG---CCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 44334 0.7 0.884277
Target:  5'- gGCGGGCGCgGCccaGAGCGGcGCGCg -3'
miRNA:   3'- -UGUUCGUGaUGaagCUCGCCaCGUGg -5'
21386 5' -52.3 NC_004812.1 + 45304 0.68 0.93853
Target:  5'- aACAGGagagACUugUUCGuucgcauccaGGCGG-GCGCCg -3'
miRNA:   3'- -UGUUCg---UGAugAAGC----------UCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 48034 0.73 0.764338
Target:  5'- ---cGCGCUGCc-CGAGCGGggcgcGCGCCa -3'
miRNA:   3'- uguuCGUGAUGaaGCUCGCCa----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 48303 0.67 0.972879
Target:  5'- cGCAcGCGCgUGCgggcUCGGGCguGGUGC-CCg -3'
miRNA:   3'- -UGUuCGUG-AUGa---AGCUCG--CCACGuGG- -5'
21386 5' -52.3 NC_004812.1 + 51194 0.68 0.93853
Target:  5'- cGCGGGCGCcggGCcccgcCGAGCGccgGCACCg -3'
miRNA:   3'- -UGUUCGUGa--UGaa---GCUCGCca-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 51435 0.7 0.884277
Target:  5'- cGCAGGCACgcgGCcgcUCGcaGGCGGgGCGCUa -3'
miRNA:   3'- -UGUUCGUGa--UGa--AGC--UCGCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 53126 0.71 0.845779
Target:  5'- cGCGgagcGGUACUACcgCGAGaCGGcGCGCCu -3'
miRNA:   3'- -UGU----UCGUGAUGaaGCUC-GCCaCGUGG- -5'
21386 5' -52.3 NC_004812.1 + 54033 0.71 0.845779
Target:  5'- -gGGGUugUACUUCaggucGGUGGUGUGCCa -3'
miRNA:   3'- ugUUCGugAUGAAGc----UCGCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 55369 0.67 0.969977
Target:  5'- --cGGCGCUGCggcccgUCGAGgcCGGcgcgGCGCCc -3'
miRNA:   3'- uguUCGUGAUGa-----AGCUC--GCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 56128 0.68 0.947832
Target:  5'- cGCcuGCGC-GCUcCGGGCGGccGCGCCc -3'
miRNA:   3'- -UGuuCGUGaUGAaGCUCGCCa-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 56570 0.66 0.982479
Target:  5'- gGCGcGCACgcGC-UCGAGCGcGgcgaugGCGCCg -3'
miRNA:   3'- -UGUuCGUGa-UGaAGCUCGC-Ca-----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 59251 0.72 0.792943
Target:  5'- gGCGAGC--UGCUUgGcGGCGGUGCGCg -3'
miRNA:   3'- -UGUUCGugAUGAAgC-UCGCCACGUGg -5'
21386 5' -52.3 NC_004812.1 + 63722 0.67 0.969977
Target:  5'- cACAcGCGCUGCcg-GAGCG-UGCGCUg -3'
miRNA:   3'- -UGUuCGUGAUGaagCUCGCcACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.