miRNA display CGI


Results 21 - 40 of 147 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
21386 5' -52.3 NC_004812.1 + 134654 0.66 0.982479
Target:  5'- cGCGAGCACcACggCGuGGCGuGUG-ACCa -3'
miRNA:   3'- -UGUUCGUGaUGaaGC-UCGC-CACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 131557 0.69 0.928226
Target:  5'- cGCGuGGgACU-CgggCGAGCuGGUGCACCg -3'
miRNA:   3'- -UGU-UCgUGAuGaa-GCUCG-CCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 131402 0.67 0.969977
Target:  5'- aGCGAGCAC-GCguccUGGGCGGacgUGCGCg -3'
miRNA:   3'- -UGUUCGUGaUGaa--GCUCGCC---ACGUGg -5'
21386 5' -52.3 NC_004812.1 + 130008 0.66 0.978065
Target:  5'- aGCAGGCGCggucgaGCUccacgUCGccGGCGGUGaCGCg -3'
miRNA:   3'- -UGUUCGUGa-----UGA-----AGC--UCGCCAC-GUGg -5'
21386 5' -52.3 NC_004812.1 + 129994 0.66 0.980365
Target:  5'- -gAGGCGCUGCUgUCGu-CGGUG-ACCg -3'
miRNA:   3'- ugUUCGUGAUGA-AGCucGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 129705 0.66 0.976593
Target:  5'- gGCAGGUGCUGCUggaGGUGGUGgugagcgcguacggaCGCCg -3'
miRNA:   3'- -UGUUCGUGAUGAagcUCGCCAC---------------GUGG- -5'
21386 5' -52.3 NC_004812.1 + 129664 0.67 0.959953
Target:  5'- -gGGGCACgACUgCGggcuGGCGGUGgACCu -3'
miRNA:   3'- ugUUCGUGaUGAaGC----UCGCCACgUGG- -5'
21386 5' -52.3 NC_004812.1 + 129411 0.67 0.96352
Target:  5'- cGCGGGCGCgGCggCGcGGCGGcgGgGCCg -3'
miRNA:   3'- -UGUUCGUGaUGaaGC-UCGCCa-CgUGG- -5'
21386 5' -52.3 NC_004812.1 + 129085 0.74 0.693723
Target:  5'- gGCAGGCgGCggcgGCggCGGGCGGgcGCGCCg -3'
miRNA:   3'- -UGUUCG-UGa---UGaaGCUCGCCa-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 128970 0.66 0.982479
Target:  5'- uCGGGCcCgg---CGGGCGGUcGCGCCg -3'
miRNA:   3'- uGUUCGuGaugaaGCUCGCCA-CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 128167 0.68 0.943305
Target:  5'- cGCGcGGCGCUGCgUCGgcgccuGGCGGagacGCACCu -3'
miRNA:   3'- -UGU-UCGUGAUGaAGC------UCGCCa---CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 125770 0.68 0.956152
Target:  5'- cCGGGCGCgccccCGGGCGGcgccugGCGCCg -3'
miRNA:   3'- uGUUCGUGaugaaGCUCGCCa-----CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 123836 0.67 0.972879
Target:  5'- cCGGGCGCacGCgaCGGGCGaGUGCgACCc -3'
miRNA:   3'- uGUUCGUGa-UGaaGCUCGC-CACG-UGG- -5'
21386 5' -52.3 NC_004812.1 + 122228 0.67 0.972879
Target:  5'- gGCGGGCGCgggggGC-UCGgcGGCGGgGCGCg -3'
miRNA:   3'- -UGUUCGUGa----UGaAGC--UCGCCaCGUGg -5'
21386 5' -52.3 NC_004812.1 + 122037 0.66 0.978065
Target:  5'- nCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3'
miRNA:   3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 122001 0.67 0.969977
Target:  5'- cCGGGCGggACUUgggcgcCGGGCGGgacuuggGCGCCg -3'
miRNA:   3'- uGUUCGUgaUGAA------GCUCGCCa------CGUGG- -5'
21386 5' -52.3 NC_004812.1 + 121165 0.71 0.837437
Target:  5'- uGC-AGCGCUGCgagggcCGGGUGGUGUuucuGCCg -3'
miRNA:   3'- -UGuUCGUGAUGaa----GCUCGCCACG----UGG- -5'
21386 5' -52.3 NC_004812.1 + 119877 0.66 0.975312
Target:  5'- gACGGGC-CUGCacccCGGggucgccuucaccGUGGUGCGCCa -3'
miRNA:   3'- -UGUUCGuGAUGaa--GCU-------------CGCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 119219 0.68 0.956152
Target:  5'- cGCGGcCGCUGCUgcaccgCGGG-GGUGCGCUu -3'
miRNA:   3'- -UGUUcGUGAUGAa-----GCUCgCCACGUGG- -5'
21386 5' -52.3 NC_004812.1 + 117268 0.7 0.884277
Target:  5'- cCGAGCGCUcCggCGGGCGGggGCGgCg -3'
miRNA:   3'- uGUUCGUGAuGaaGCUCGCCa-CGUgG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.